rs232088368 SNP Detail

Summary

• ID
  rs232088368
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:3688628 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              GTATACACTA CAACTCACTA
  GTAGCTGTCT CACTCTTCAG ATCAATTGCC GTGGTATCAC AGTGCTTGTG TTTCAGTGAT
  CCCTACTTTA CTTATTGATG GTCCTGATGT CCAAGTGTCC AAGAGTAAGG ATACATAGGC
  CTTTTATTTC ACTGTATTGT TAGAACAGTT AATTGAATAT ATATATATAT ATATATATAT
  M
  GTTTTTCGAA ACAGGGTTTC TCTGTGTATC CCTGGCTATC CTGGAGCTCA CTCTGTAGAA
  CAGGCTGAAC TTGAACTCAG AAATCCTCCT GCCTCTGCCT CCCAAGTGCT GGGATTAAAG
  GCATGCGCCA CCACTGCCCA GCTAATATAT ATATATATAT ATATATATAT ATATATATAT
  ATATATATAA CAATTAATCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	DBA/1J	I/LnJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss379331504	MGP_WTSI_10_6607913	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	C	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	DBA/1J	I/LnJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs232088368					SNP	A	A	A	A	A	A	A	A	C	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss379331504	MGP_WTSI_10_6607913	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:3688628 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi1270	CpG island 1270	1588 bp proximal
Gm30164	predicted gene, 30164	within coordinates
Plekhg1	pleckstrin homology domain containing, family G (with RhoGef domain) member 1	1736 bp upstream
Rr222570	regulatory region 222570	1289 bp distal
Rr224667	regulatory region 224667	1172 bp proximal
Tssr92214	transcription start site region 92214	1625 bp upstream
Tssr92215	transcription start site region 92215	1720 bp upstream
Tssr92216	transcription start site region 92216	1825 bp upstream