rs232104495 SNP Detail

Summary

• ID
  rs232104495
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:15044894 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAAGTGAT GCAGTCAAGT
  CAAAGGGCCA AGTTTCCTAT TAAAAAAAAA AAATGAGTGT GAGTCTTCTA AGTGCCACGG
  CCCTAGTCAT CAGGGGGCTG TGAGTTATCT TGTGCTCATG GCTATGTGTG GATGGGGGAC
  TGTGAGTTAG CTTGTGCTCA TGGCTATGTG TGGATGGGGG CTGTGAGTTA GCTTGTGCTC
  R
  TGGCTATGTG TGGATGGGGG CTGTGAGTTA GTTTGTGCTC ATGGCTATGT GTGGATGGGG
  GCTGTGAGTT AGCTTGTGCT CATGGCTATG TGTGGATGGG GACTGGATGG GGGCTGTGAG
  TTAGCTTGTG CTCGTGGCTA TGTGTGGATG GGGGCTGTGA GTTAGCTTGT GCTCATGGCT
  ATGTGTGGAT GGGGGCTGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373786528	MGP_WTSI_8_14994894	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs232104495					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373786528	MGP_WTSI_8_14994894	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:15044894 () rs orientation: forward

Symbol	Name	Function Class
Arhgef10	Rho guanine nucleotide exchange factor 10	within coordinates
Gm35149	predicted gene, 35149	within coordinates
Gm56855	predicted gene, 56855	within coordinates
Gm64037	predicted gene, 64037	within coordinates
Rr368499	regulatory region 368499	226 bp downstream
Rr368500	regulatory region 368500	1273 bp upstream
Rr660150	regulatory region 660150	1746 bp distal
Rr660152	regulatory region 660152	245 bp distal
Rr660153	regulatory region 660153	within coordinates
Rr660154	regulatory region 660154	1139 bp proximal
Tssr76473	transcription start site region 76473	1884 bp downstream
Tssr76474	transcription start site region 76474	236 bp downstream
Tssr76475	transcription start site region 76475	1234 bp upstream
Tssr76476	transcription start site region 76476	1262 bp upstream
Tssr80482	transcription start site region 80482	394 bp upstream
Tssr80483	transcription start site region 80483	1100 bp downstream