rs232110646 SNP Detail

Summary

• ID
  rs232110646
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115168576 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGAGCCCG ACCTTCGACC
  CTGGTCCGAC AGTACAGGGA TCAGGGTGAG ACCGTACCTT AGGGGGCACC CAAAAGCTCA
  GTAGTCAAGG TAAATCATTC ATATTCCATG TTTTAAAAGA AAATTGATGC AAAGCCTAAA
  ATCAATATCT TTTAAAAGTT TTTTCTAACA TTTATATATT TTATTACATT ATTTATGGGG
  R
  CCGGTGTACA CTTGCCACAG CGTTCGCGTG GTGTGTGGTA GTCAGAGGAC AGCTTATAGG
  AGTTGGTTCC CTCCTCTACG TGAATTCCTG GGTTTCAGAC TCATTTAAGG CTGAGGGCAA
  GCAACTTTAC CCTCCAGCCG ACCCACACAT GTTTTCTACA CAAGAACAGG ACCTGAAGAA
  GGGTGAATGC TTAATGTGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384825592	MGP_WTSI_11_115139064	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs232110646					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384825592	MGP_WTSI_11_115139064	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115168576 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4117	CpG island 4117	289 bp distal
Fads6	fatty acid desaturase domain family, member 6	1872 bp downstream
Fdxr	ferredoxin reductase	700 bp upstream
Gm74405	predicted gene, 74405	within coordinates
Rr246090	regulatory region 246090	within coordinates
Rr403113	regulatory region 403113	413 bp downstream
Tssr105852	transcription start site region 105852	321 bp downstream
Tssr111738	transcription start site region 111738	844 bp upstream
Tssr111739	transcription start site region 111739	807 bp upstream
Tssr111740	transcription start site region 111740	778 bp upstream
Tssr111741	transcription start site region 111741	766 bp upstream