rs232112892 SNP Detail

Summary

• ID
  rs232112892
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:27316688 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATGGCGCC CGCGGCGCCT
  GTGCGCTCGC CGCTGCGGCC GCTGGCCAGC TGGCTCAGGG TAGCGCTCCG GCCAAAGTGC
  GGTGACCGCG GGGCATCCCG CCCGCCCGCG CGGGGCTCGG CCGCCGGGGC GGGGCTTCGC
  GCAGGCGGCC CCGGGTCCCC GCTGCGCGGC CGCACGGCCC TCCTCTTCCT CCTCCTCCTC
  Y
  TCGGGCTACT AGCCGGCCGC CGCTCCCGCC CACGTGCGGC CAACCGGCGC TCGCGGGGCA
  GCGTGCGGGG TCCCTCTTTC ACACACACAA GTCCGCTCGT GCTCCGGCCG GGGCTCCACG
  CCTCCTGCAG TCGCAGCGCT TCTCGATCCG CCCCTCTGGG CGCCGCATTC TGAGCTCCGG
  GCGCCCCGCT TCGGCCACCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353451598	MGP_WTSI_2_27282196	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs232112892					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353451598	MGP_WTSI_2_27282196	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:27316688 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11368	CpG island 11368			within coordinates
Rr553545	regulatory region 553545			1836 bp distal
Rr553546	regulatory region 553546			within coordinates
Rr553547	regulatory region 553547			115 bp proximal
Rr553548	regulatory region 553548			347 bp proximal
Rr553549	regulatory region 553549			1611 bp proximal
Tssr23213	transcription start site region 23213			141 bp upstream
Tssr23214	transcription start site region 23214			113 bp upstream
Tssr23215	transcription start site region 23215			63 bp upstream
Tssr23216	transcription start site region 23216			316 bp downstream
Vav2	vav 2 oncogene			mRNA-UTR
				Noncoding-Transcript-Variant