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rs232117740 SNP Detail
Summary
  • ID
    rs232117740
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr11:94843597 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AGCAAATGTT TCTTTTGTTC
AAAGTATTTT TTATTCTTTT TTTTTTTTTT TTTAATGGAT AGGGACTTGT GTGAATTGTT
GGGGTTTTTT TTTTTTTTTT TTTTGGTTTT GTTTTTTTTT GTTTTGTTTT GTTTTTTTTC
CTGAAGGTGC TATTTAACAA GGGAGAAGAG AGTGCGGGGA CTTCACCCTG CCCACTCTCT
M
CTCTCTCTCC ACTCTTCTAG TTCCTGGGCC TATCTGATCT CTCTCTTTCT TCTGAAACCC
TCCCCTCTTG CTGCTGCTCC CTCCCCTCTG CCTCTCTCTT GGTCTGTCCT GCATCAGGGT
TTCAGAGCAC CACTTTCCAA AGCACAAAAC AGTTTTTACC CCTGGGCTGG GAGGAAACAA
GAGACTCTGT ACCTATTTTG                                            

M = A/C

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss384336282 MGP_WTSI_11_94814085 EVA_MGPV3 EVA_MGPV3 f SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs232117740 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss384336282 MGP_WTSI_11_94814085 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr11:94843597 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Col1a1 collagen, type I, alpha 1 within coordinates
D11Lis1 DNA segment, Chr 11, Lisse 1 547 bp proximal
Gm74287 predicted gene, 74287 1480 bp downstream
Tssr3647 transcription start site region 3647 787 bp downstream
Tssr104273 transcription start site region 104273 1933 bp downstream
Tssr104274 transcription start site region 104274 1915 bp downstream
Tssr104275 transcription start site region 104275 1906 bp downstream
Tssr104276 transcription start site region 104276 1895 bp downstream
Tssr104277 transcription start site region 104277 1621 bp downstream
Tssr104278 transcription start site region 104278 1600 bp downstream
Tssr104279 transcription start site region 104279 1543 bp downstream
Tssr104280 transcription start site region 104280 1531 bp downstream
Tssr104281 transcription start site region 104281 1517 bp downstream
Tssr104282 transcription start site region 104282 1447 bp downstream
Tssr104283 transcription start site region 104283 1294 bp downstream
Tssr104284 transcription start site region 104284 1234 bp downstream
Tssr104285 transcription start site region 104285 1204 bp downstream
Tssr104286 transcription start site region 104286 1171 bp downstream
Tssr104287 transcription start site region 104287 1147 bp downstream
Tssr104288 transcription start site region 104288 1107 bp downstream
Tssr104289 transcription start site region 104289 1099 bp downstream
Tssr104290 transcription start site region 104290 1051 bp downstream
Tssr104291 transcription start site region 104291 1036 bp downstream
Tssr104292 transcription start site region 104292 939 bp downstream
Tssr104293 transcription start site region 104293 832 bp downstream
Tssr104294 transcription start site region 104294 798 bp downstream
Tssr104295 transcription start site region 104295 754 bp downstream
Tssr104296 transcription start site region 104296 730 bp downstream
Tssr104297 transcription start site region 104297 707 bp downstream
Tssr104298 transcription start site region 104298 673 bp downstream
Tssr104299 transcription start site region 104299 639 bp downstream
Tssr104300 transcription start site region 104300 619 bp downstream
Tssr104301 transcription start site region 104301 499 bp downstream
Tssr104302 transcription start site region 104302 485 bp downstream
Tssr104303 transcription start site region 104303 466 bp downstream
Tssr104304 transcription start site region 104304 424 bp downstream
Tssr104305 transcription start site region 104305 402 bp downstream
Tssr104306 transcription start site region 104306 387 bp downstream
Tssr104307 transcription start site region 104307 370 bp downstream
Tssr104308 transcription start site region 104308 297 bp downstream
Tssr104309 transcription start site region 104309 273 bp downstream
Tssr104310 transcription start site region 104310 187 bp downstream
Tssr104311 transcription start site region 104311 138 bp downstream
Tssr104312 transcription start site region 104312 69 bp downstream
Tssr104313 transcription start site region 104313 53 bp downstream
Tssr104314 transcription start site region 104314 348 bp upstream
Tssr110222 transcription start site region 110222 1873 bp upstream
Tssr110223 transcription start site region 110223 1514 bp upstream
Tssr110224 transcription start site region 110224 1450 bp upstream
Tssr110225 transcription start site region 110225 1234 bp upstream
Tssr110226 transcription start site region 110226 1194 bp upstream
Tssr110227 transcription start site region 110227 1181 bp upstream
Tssr110228 transcription start site region 110228 1121 bp upstream
Tssr110229 transcription start site region 110229 1101 bp upstream
Tssr110230 transcription start site region 110230 1064 bp upstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory