rs232119052 SNP Detail

Summary

• ID
  rs232119052
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:110681312 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCTACAAGG GATATGTCTG CGGTACTAAA
  ATGGGTGGCC GGGGTGGTGA CAGGCCGGCC AGAGCCTCAC TACCCGGTGT TGGGCAGCTT
  TTCCTCCGCT CGTCTTTATA AGCCCTTCCT TTTACACAGG GCGCGTGTGG AAAGCCGCCG
  K
  AAGGCCGGGG CCACAACACA ACATGGCAGC AGGCACCTCC GCCCCACTCC GCGCGAACAA
  AAGAGCAGCG AGTTCCTCCC CCAGGCCCAG GCTGGCTCAG CTTCCGAGCG GCGTCTAGCG
  AGGGCCCAGG CCTGGGCGGG AGGCGCCCCC                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322401270	CHEV_7_118225619	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs232119052					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:110681312 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19582	CpG island 19582	within coordinates
Eif4g2	eukaryotic translation initiation factor 4, gamma 2	within coordinates
Gm57201	predicted gene, 57201	460 bp upstream
Rr166520	regulatory region 166520	within coordinates
Rr381309	regulatory region 381309	within coordinates
Tssr2372	transcription start site region 2372	1783 bp upstream
Tssr68538	transcription start site region 68538	1912 bp downstream
Tssr68539	transcription start site region 68539	1069 bp upstream
Tssr68540	transcription start site region 68540	1105 bp upstream
Tssr68541	transcription start site region 68541	1219 bp upstream
Tssr74295	transcription start site region 74295	1792 bp upstream
Tssr74296	transcription start site region 74296	1159 bp upstream
Tssr74297	transcription start site region 74297	468 bp upstream
Tssr74298	transcription start site region 74298	50 bp upstream
Tssr74299	transcription start site region 74299	110 bp downstream
Tssr74300	transcription start site region 74300	342 bp downstream
Tssr74301	transcription start site region 74301	424 bp downstream
Tssr74302	transcription start site region 74302	503 bp downstream
Tssr74303	transcription start site region 74303	892 bp downstream