rs232121017 SNP Detail

Summary

• ID
  rs232121017
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117938917 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGTATTCT ATCTTTATAA
  ATGACCATGA GAACAACATT CTATAGACAC ACCTGGTGTT TCTTCAGGCT AAATTCCCCA
  AGTGTAGACA AGACAACCTT TAAGGCTTTT GATACATGCT TTTAAATTGC CTCAGAAGGA
  GAAGTTTCTG GCAGGATGGT ACCCCCCCCC CCGCACCCCG CACCACCCCC CCCCCCCCCC
  C
  CCGCCAGCAA TCAGTTGAAA CCATGTATCT GGTTTTATCT GGTTGTCACT ATCACCATTC
  AAAATTGTGC GGGGGTTGGG GGGAGGATAT GCCGTCTCGT TTCTACTTTA TTTCCACTTG
  CATGACTTGA TTACATTATG GAACCATGTC AGTCGTCTGT GTAAGCAGGG GGGTTGCTGA
  GGAGGGAGAA AGGCATGGTC                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/2J	JF1/MsJ	MA/MyJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	ZALENDE/EiJ
ss381933519	MGP_WTSI_10_117540068	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/2J	JF1/MsJ	MA/MyJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	ZALENDE/EiJ
rs232121017					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381933519	MGP_WTSI_10_117540068	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117938917 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2246	CpG island 2246	186 bp proximal
Gm66186	predicted gene, 66186	11 bp downstream
Gm66289	predicted gene, 66289	1805 bp upstream
Rr369079	regulatory region 369079	199 bp upstream
Tssr3367	transcription start site region 3367	1042 bp downstream
Tssr99497	transcription start site region 99497	229 bp downstream