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rs232124624 SNP Detail
Summary
  • ID
    rs232124624
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr3:93352812 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AGAGGAGGCG TCGACAGCAG
CGCGACCGTC AGATCCTAGA GGAAGAGCAG TTTCAGCGAG AGCACCAACG GGAAGCCAGA
AGACGAGATG AGACGTTCCA GGAGGAAGAA CAGCTCCAGG GAGAATCGAG AAGACGGCAA
CAGGAGAGAG AGGGCAAGTT CCTTGAGGAG GAAAGGCAGC TGCGGACAGA ACGGGAAGAG
M
AGAGGCGGCG TCAAGAACAA GAGAGAGAAT TCCAAGAGGA GGAGGAGCAC CTCCAAGAAC
GCGAGAAAGA ACTTCGGCAG GAATGCGACA GAAAATCTCG TGAACAAGAG CGCCGCCAGC
AGCGTGAGGA AGAGCAGCTG AGGCGTCAGG AGCGGGACCA GAGATTCCGT CGGGAACAAG
AACGCCACCT GGAACGTGAG                                            

M = A/C

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss358876337 MGP_WTSI_3_93249427 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs232124624 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss358876337 MGP_WTSI_3_93249427 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:93352812 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Cpgi13475 CpG island 13475 within coordinates
Gm37245 predicted gene, 37245 within coordinates
Gm56800 predicted gene, 56800 711 bp upstream
Gm66249 predicted gene, 66249 within coordinates
Tchh trichohyalin within coordinates
Tssr961 transcription start site region 961 1499 bp downstream
Tssr962 transcription start site region 962 379 bp downstream
Tssr963 transcription start site region 963 343 bp downstream
Tssr964 transcription start site region 964 244 bp downstream
Tssr30349 transcription start site region 30349 2000 bp downstream
Tssr30350 transcription start site region 30350 1956 bp downstream
Tssr30351 transcription start site region 30351 1932 bp downstream
Tssr30352 transcription start site region 30352 1882 bp downstream
Tssr30353 transcription start site region 30353 1863 bp downstream
Tssr30354 transcription start site region 30354 1848 bp downstream
Tssr30355 transcription start site region 30355 1829 bp downstream
Tssr30356 transcription start site region 30356 1775 bp downstream
Tssr30357 transcription start site region 30357 1720 bp downstream
Tssr30358 transcription start site region 30358 1602 bp downstream
Tssr30359 transcription start site region 30359 1576 bp downstream
Tssr30360 transcription start site region 30360 1546 bp downstream
Tssr30361 transcription start site region 30361 1221 bp downstream
Tssr30362 transcription start site region 30362 1205 bp downstream
Tssr30363 transcription start site region 30363 1063 bp downstream
Tssr30364 transcription start site region 30364 991 bp downstream
Tssr30365 transcription start site region 30365 956 bp downstream
Tssr30366 transcription start site region 30366 903 bp downstream
Tssr30367 transcription start site region 30367 864 bp downstream
Tssr30368 transcription start site region 30368 840 bp downstream
Tssr30369 transcription start site region 30369 836 bp downstream
Tssr30370 transcription start site region 30370 827 bp downstream
Tssr30371 transcription start site region 30371 800 bp downstream
Tssr30372 transcription start site region 30372 790 bp downstream
Tssr30373 transcription start site region 30373 737 bp downstream
Tssr30374 transcription start site region 30374 723 bp downstream
Tssr30375 transcription start site region 30375 710 bp downstream
Tssr30376 transcription start site region 30376 674 bp downstream
Tssr30377 transcription start site region 30377 648 bp downstream
Tssr30378 transcription start site region 30378 626 bp downstream
Tssr30379 transcription start site region 30379 609 bp downstream
Tssr30380 transcription start site region 30380 530 bp downstream
Tssr30381 transcription start site region 30381 513 bp downstream
Tssr30382 transcription start site region 30382 458 bp downstream
Tssr30383 transcription start site region 30383 447 bp downstream
Tssr30384 transcription start site region 30384 438 bp downstream
Tssr30385 transcription start site region 30385 413 bp downstream
Tssr30386 transcription start site region 30386 391 bp downstream
Tssr30387 transcription start site region 30387 297 bp downstream
Tssr30388 transcription start site region 30388 278 bp downstream
Tssr30389 transcription start site region 30389 256 bp downstream
Tssr30390 transcription start site region 30390 185 bp downstream
Tssr30391 transcription start site region 30391 175 bp downstream
Tssr30392 transcription start site region 30392 157 bp downstream
Tssr30393 transcription start site region 30393 146 bp downstream
Tssr30394 transcription start site region 30394 120 bp downstream
Tssr30395 transcription start site region 30395 93 bp downstream
Tssr30396 transcription start site region 30396 43 bp downstream
Tssr30397 transcription start site region 30397 27 bp downstream
Tssr30398 transcription start site region 30398 39 bp upstream
Tssr30399 transcription start site region 30399 86 bp upstream
Tssr30400 transcription start site region 30400 571 bp upstream
Tssr30401 transcription start site region 30401 591 bp upstream
Tssr30402 transcription start site region 30402 690 bp upstream
Tssr30403 transcription start site region 30403 730 bp upstream
Tssr30404 transcription start site region 30404 1868 bp upstream
Tssr30405 transcription start site region 30405 1979 bp upstream
Tssr34352 transcription start site region 34352 1621 bp upstream
Tssr34353 transcription start site region 34353 1615 bp upstream
Tssr34354 transcription start site region 34354 1564 bp upstream
Tssr34355 transcription start site region 34355 1467 bp upstream
Tssr34356 transcription start site region 34356 786 bp upstream
Tssr34357 transcription start site region 34357 721 bp upstream
Tssr34358 transcription start site region 34358 662 bp upstream
Tssr34359 transcription start site region 34359 587 bp upstream
Tssr34360 transcription start site region 34360 542 bp upstream
Tssr34361 transcription start site region 34361 485 bp upstream
Tssr34362 transcription start site region 34362 472 bp upstream
Tssr34363 transcription start site region 34363 447 bp upstream
Tssr34364 transcription start site region 34364 432 bp upstream
Tssr34365 transcription start site region 34365 406 bp upstream
Tssr34366 transcription start site region 34366 338 bp upstream
Tssr34367 transcription start site region 34367 173 bp upstream
Tssr34368 transcription start site region 34368 143 bp upstream
Tssr34369 transcription start site region 34369 117 bp upstream
Tssr34370 transcription start site region 34370 91 bp upstream
Tssr34371 transcription start site region 34371 within coordinates
Tssr34372 transcription start site region 34372 703 bp downstream
Tssr34373 transcription start site region 34373 1871 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory