rs232131181 SNP Detail

Summary

• ID
  rs232131181
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:26728149 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGAGAGTTG AGACGTCCTT
  CTTGAATGTC ACTTTAAAAG TTTTACGCTG AACAAGGGAA TGCTTCCAGT TAGTTCCCAC
  CCCCCACCCC GGAGTGTTAT CTTTACCGCG GTGGTCCCTA GAGGACTTAC TTGGAGCAAA
  GGGAGGAGGG TTGCAAGATC TTTGGAGCCC AGGTTTAACA TTGGGGTTGG GGGGGTGGGG
  K
  GGGGGAGACT TGGGTAGAGC TCCACAGCGC CGCCTAGGGA CGGCCCAGAA CATTGTCGTC
  GCGTGGCATC AAGAGGATGC TGCTAGCCGC TGCTCCTCTG TCCCCCAACA CAACTTTCTT
  TTGTTTTGTT TTGTTTGTTT CAGAGAGGAT CTTGCTGTGT AGCTCTGGCT AGTCTTGAAC
  TCATAGAGAT CCTCCTGTCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397901228	MGP_WTSI_17_26646120	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs232131181					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397901228	MGP_WTSI_17_26646120	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26728149 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8810	CpG island 8810	1825 bp distal
Cpgi8811	CpG island 8811	152 bp distal
Dusp1	dual specificity phosphatase 1	703 bp upstream
Gm56886	predicted gene, 56886	within coordinates
Rr339410	regulatory region 339410	within coordinates
Rr392454	regulatory region 392454	1716 bp upstream
Rr405112	regulatory region 405112	442 bp downstream
Rr405113	regulatory region 405113	70 bp downstream
Rr406958	regulatory region 406958	within coordinates
Tssr5044	transcription start site region 5044	211 bp downstream
Tssr5045	transcription start site region 5045	288 bp downstream
Tssr5046	transcription start site region 5046	341 bp downstream
Tssr5047	transcription start site region 5047	350 bp downstream
Tssr143231	transcription start site region 143231	1674 bp downstream
Tssr143232	transcription start site region 143232	495 bp downstream
Tssr143233	transcription start site region 143233	444 bp downstream
Tssr143234	transcription start site region 143234	401 bp downstream
Tssr143235	transcription start site region 143235	526 bp upstream
Tssr143236	transcription start site region 143236	551 bp upstream
Tssr146951	transcription start site region 146951	1516 bp upstream
Tssr146952	transcription start site region 146952	968 bp upstream
Tssr146953	transcription start site region 146953	928 bp upstream
Tssr146954	transcription start site region 146954	693 bp upstream
Tssr146955	transcription start site region 146955	293 bp upstream
Tssr146956	transcription start site region 146956	319 bp downstream
Tssr146957	transcription start site region 146957	384 bp downstream