rs232136837 SNP Detail

Summary

• ID
  rs232136837
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:102208309 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGCAGAGG GCGGGAGGAC
  GGCGGCCGCG AGGCGGGGGC GCTTCGCTCA CCGGCCCCGC CGCCCCCTCC GGCGGCCGGC
  GAGAACTGCG CCTGTCGGCC GGAGAAACGC GGGCTCCTCC ACCCGGGGCC TCACTTGGGC
  CTCGCTTCCT GCCCTTCCTA CCCCCGGCTC ACGGCGCCCT TCCCCGTTCC CTGATCATCT
  Y
  GTCTACAGTT CTCCCGGTAT CGCCACTCGG CGTCTACCGC AGCCGCGGCT CGCTCCCTAG
  CCCCGGCCCC GGCGCACGTC CTCCGCCGCC TCGGTTACCC GGCGCAGCGC GGCCTCTGAG
  CTCCCCGCTC CGGCGGCTCC CTTCTCGGCT CTGAGCGCGG CGCCCTCCCC CGCTCGGCCG
  GGCACAGCCG CAACTCCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss384500220	MGP_WTSI_11_102178797	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	C	T	T	T	T	C	T	C	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs232136837					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	C	T	T	T	T	C	T	C	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384500220	MGP_WTSI_11_102178797	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:102208309 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3917	CpG island 3917	within coordinates
Rr245873	regulatory region 245873	within coordinates
Tssr105213	transcription start site region 105213	624 bp downstream
Tssr105214	transcription start site region 105214	514 bp downstream
Tssr105215	transcription start site region 105215	468 bp downstream
Tssr111024	transcription start site region 111024	837 bp upstream
Tssr111025	transcription start site region 111025	805 bp upstream
Tssr111026	transcription start site region 111026	775 bp upstream
Tssr111027	transcription start site region 111027	140 bp downstream
Tssr111028	transcription start site region 111028	277 bp downstream
Tssr111029	transcription start site region 111029	304 bp downstream
Tssr111030	transcription start site region 111030	377 bp downstream
Tssr111031	transcription start site region 111031	553 bp downstream
Tssr111032	transcription start site region 111032	1458 bp downstream
Tssr111033	transcription start site region 111033	1610 bp downstream
Tssr111034	transcription start site region 111034	1859 bp downstream
Tssr111035	transcription start site region 111035	1899 bp downstream
Ubtf	upstream binding transcription factor, RNA polymerase I	within coordinates