rs232152125 SNP Detail

Summary

• ID
  rs232152125
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:56429086 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCTGCTCC TCTATGTCTG
  TCCTCAAGAC CCCAGGAAGG TGGCTTTATA TAGTCCCCAC CCCAACTCTG CTCTGAGGCA
  AAGCAGGAAG AGCCCAGGGC CGGGTCAACA TTGCTACATC CCTTCCTGGC AGTGACTGTG
  GCATCCTGCC CACCCTTTCC CAGACTTTCT GCAGCTTTTA CTTCCTAGTT AAGGGTGAGG
  W
  GGGGATTGCT CTACCCAATG TCTCCTAGGC TGAGTCCTCT CCCACCAGGA TCCAGGGACT
  GAGTTTGCAA TAAGAGCAGG AACGTGGCTG CTCTTTGAGC AGGTGACAGG AAATGTGTTG
  GAAAAAAAAA AATCTCTGGT CTTGAACACC TGATGTGTTG TTTGCTTTTT ATGCTCAAGT
  AGCTTTCCTA CTGAACAAGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398551835	MGP_WTSI_17_56261509	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs232152125					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398551835	MGP_WTSI_17_56261509	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:56429086 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9340	CpG island 9340	1159 bp distal
Cpgi9341	CpG island 9341	1345 bp proximal
Gm56918	predicted gene, 56918	1009 bp downstream
Lrg1	leucine-rich alpha-2-glycoprotein 1	140 bp upstream
Rr340022	regulatory region 340022	85 bp distal
Rr340023	regulatory region 340023	1714 bp proximal
Sema6b	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B	999 bp downstream
Tssr5174	transcription start site region 5174	1871 bp downstream
Tssr5175	transcription start site region 5175	144 bp upstream
Tssr148750	transcription start site region 148750	1955 bp upstream
Tssr148751	transcription start site region 148751	1772 bp upstream
Tssr148752	transcription start site region 148752	1720 bp upstream
Tssr148753	transcription start site region 148753	1466 bp upstream
Tssr148754	transcription start site region 148754	1405 bp upstream
Tssr148755	transcription start site region 148755	1268 bp upstream
Tssr148756	transcription start site region 148756	1238 bp upstream
Tssr148757	transcription start site region 148757	1058 bp upstream
Tssr148758	transcription start site region 148758	1023 bp upstream
Tssr148759	transcription start site region 148759	166 bp upstream
Tssr148760	transcription start site region 148760	128 bp upstream
Tssr148761	transcription start site region 148761	100 bp upstream
Tssr148762	transcription start site region 148762	85 bp upstream