rs232154546 SNP Detail

Summary

• ID
  rs232154546
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:77875391 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGGAGCAG CGGCGTGTCT
  TGACCCCGGG ATGGGGGTTG GGAGGAGTGA GGTGAGCCCC ATCTGAGATT GGTTGTAGGT
  TGGGAGCCGG GACTGAGCGG CCGAGTGCGG CCGGCGGCGG CGGCGGCGGC GGCGGCGGGG
  GAGGAAGGGG AGGAGCTCCA GGTCCAGTGC CGCTTGGCGG CCGCGCGCGC CCGCCGCCCT
  Y
  AGGGCTCCTG CCTGGCTGGG CTCTCCTTGG GCTTAATGCG CGGAGCCTCG GCCACCCAGT
  TAACCCTGGT CCTGACTCAG GAGAGCGGGT GCTTACGATG GTGCAGGAAA TCATGAATGG
  TGTCTCTCAA GACCACTTCT CTGCCTCTGT GTTTACAATA TGGCGACCTG CCTTTAAATT
  ATATTTTTAT TCTCAGCGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383949287	MGP_WTSI_11_77798067	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs232154546					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383949287	MGP_WTSI_11_77798067	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:77875391 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3325	CpG island 3325	within coordinates
D11Bhm45	DNA segment, Chr 11, Boehm 45	479 bp distal
Gm53689	predicted gene, 53689	548 bp upstream
Phf12	PHD finger protein 12	within coordinates
Rr386326	regulatory region 386326	1080 bp downstream
Rr451840	regulatory region 451840	1753 bp distal
Tssr103208	transcription start site region 103208	1914 bp downstream
Tssr103209	transcription start site region 103209	1742 bp downstream
Tssr103210	transcription start site region 103210	1723 bp downstream
Tssr103211	transcription start site region 103211	1667 bp downstream
Tssr103212	transcription start site region 103212	1188 bp upstream