rs232159353 SNP Detail

Summary

• ID
  rs232159353
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:95741343 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGAATAAG GAAATTGAGA
  TTTTTCTCCA GAGAGAATAT AAAATAGCTA ATAAGTAAAG GAAAACACAG ATGTTTGATA
  TGATTAAAAG TAAGGGAGAC AAATCCAAAC CACACAAGGA AGTTGGTGAG ATGACTTGGG
  AGGCCAAGAC AAGAGGCTCA CTGAGTTTGA GGACAGCTTG AGCTATCAAG GTATTAAAAG
  R
  GGCTCTATAG TGAGAACTTA ACCCTCCTCA AAAACAAAAC AAGGAGATTC CATTTCAGAC
  CATTACAATA ACTATTGATA TGTAAAAGAA ATGGTAAGGA TATGGGGAAA TTGGACCCTG
  TGGTACATTG TTAGTATAGA AGTAAAATAG TGTAACTTAA CGGTTGTGAA GTGGAATGAA
  GGTGCTACTA AAGGAGGAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323104529	CHEV_9_95759709	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs232159353					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:95741343 () rs orientation: forward

Symbol	Name	Function Class
1700065D16Rik	RIKEN cDNA 1700065D16 gene	1408 bp upstream
Atr	ataxia telangiectasia and Rad3 related	within coordinates
Cpgi22158	CpG island 22158	786 bp distal
Rr198099	regulatory region 198099	658 bp proximal
Rr206894	regulatory region 206894	542 bp distal
Rr368834	regulatory region 368834	1579 bp downstream
Rr401608	regulatory region 401608	467 bp downstream
Tssr86577	transcription start site region 86577	1604 bp downstream
Tssr86578	transcription start site region 86578	1580 bp downstream
Tssr86579	transcription start site region 86579	1339 bp downstream
Tssr90940	transcription start site region 90940	1720 bp upstream
Tssr90941	transcription start site region 90941	1414 bp upstream
Tssr90942	transcription start site region 90942	1395 bp upstream