rs232171538 SNP Detail

Summary

• ID
  rs232171538
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:100577600 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGACTGTCC CCACCTTCTA CAGACATCCT
  TGCCACGACA GTAACCAGAT TAGCCACTTA GTAGCCACAG AGCTCGTTCA TCAAAACCCC
  CGGCTATGGG ATGACCTGCG GGTCTTCCTC AGGTTTTGCA AGTCCTTATT GCCTGTTACC
  R
  CCCTTTCTTG GGTCTGGGTA TGTTTTCTCT CTTCCACCCA GCCCTGAAGA ATTCAAGCGT
  TTATTTCTTG TGGAACTTCC CCAACAACCC ACTCCTCTTT CATTACTCTG CAATTTTCCT
  TGGGGTCAGA ATCCGATTTG TTCTTGAGGG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325083840	CHEV_15_100510150	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs232171538					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:100577600 () rs orientation: forward

Symbol	Name	Function Class
Cela1	chymotrypsin-like elastase family, member 1	within coordinates
Gm62586	predicted gene, 62586	1330 bp upstream
Rr509797	regulatory region 509797	868 bp distal
Rr509798	regulatory region 509798	163 bp distal
Tssr136473	transcription start site region 136473	1626 bp upstream
Tssr136474	transcription start site region 136474	1597 bp upstream
Tssr136475	transcription start site region 136475	1541 bp upstream
Tssr136476	transcription start site region 136476	869 bp upstream
Tssr136477	transcription start site region 136477	1458 bp downstream
Tssr136478	transcription start site region 136478	1850 bp downstream