rs232175689 SNP Detail

Summary

• ID
  rs232175689
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:104308740 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCCCAGAC CCAAACTCAA
  GTGCTGCTTG CTGTGAGGTG GGATGTATGC CTAGGCTGCA AGATGCTAAG AGGAAGGAAT
  TGTTTCAATA TCAAGCCCCA TAATGTACAT TGGTAGTGGG GACAGAAACT AGAATTCTGG
  GATAAGCCTG AGTGGTGTCT GTGATTTGTG GAGACTGTCA TGGCCCATGT GTGAGATGAG
  R
  ACTCATTGCC CATGTGTTAG TCCACAAGTT ATGGATTATG AACTACTCAT GATTTTGGAG
  AACTCAGCCT GTGCTCTTGT TTCCCCTAAA ACATGGCCCA CAAGACATTG GTTCTCCTGA
  GGAAGATGAG AGCCTCAACT CTCCCCTGTC TCTAGTCTCA CTTTCACTCT TGCCTCTCTT
  ACACTCTCCA CCCCAGATCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387181528	MGP_WTSI_12_105580691	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs232175689					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387181528	MGP_WTSI_12_105580691	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:104308740 () rs orientation: forward

Symbol	Name	Function Class
Serpina3k	serine (or cysteine) peptidase inhibitor, clade A, member 3K	within coordinates
Tssr114848	transcription start site region 114848	1993 bp downstream
Tssr114849	transcription start site region 114849	1960 bp downstream
Tssr114850	transcription start site region 114850	1916 bp downstream
Tssr114851	transcription start site region 114851	1843 bp downstream
Tssr114852	transcription start site region 114852	1811 bp downstream
Tssr114853	transcription start site region 114853	1611 bp downstream
Tssr114854	transcription start site region 114854	1441 bp downstream
Tssr114855	transcription start site region 114855	583 bp upstream
Tssr114856	transcription start site region 114856	1639 bp upstream
Tssr114857	transcription start site region 114857	1651 bp upstream
Tssr114858	transcription start site region 114858	1723 bp upstream
Tssr117574	transcription start site region 117574	1572 bp upstream
Tssr117575	transcription start site region 117575	619 bp downstream