rs232178099 SNP Detail

Summary

• ID
  rs232178099
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13263580 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTGGACCC AATGCTTGTT
  GTTATGTCCC AGCACACGAT CAGGAGTCCC CTGACCCTTC AGGCCTTCAG GAGGGGTCAC
  CATGACCTAG CAAGCGTATC TGTTCTCCTC ATTGCTCTAG CTGCCGCGTG GTACCTGCTC
  ACTGGGGTGC TCAGTGGTTG CTGACCACAG AAAGCCCACA GATGACTATT TTCTGCCATC
  Y
  GCTTCATCTG TGGTGGTTTC ACCTCATCCT GCGGCCTTCT GTTGAACTCT CAGAGGCACT
  GAGGAGCCCT GACAGAGGGC AGGAAGTGGC TAAACGAGAG TGCTTTTCCA TCCTCTCAAG
  GCAGAACAAA ACCACAATAC TCCCCTCTGC TGAAGGGGCC ATTTTGGGGG CTGGGCCAGG
  GGCCGGAAGT ATGTTCCTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322505131	CHEV_8_13213580	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs232178099					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13263580 () rs orientation: forward

Symbol	Name	Function Class
Gm63815	predicted gene, 63815	within coordinates
Rr368495	regulatory region 368495	within coordinates
Rr368496	regulatory region 368496	392 bp upstream
Rr659886	regulatory region 659886	75 bp distal
Rr659887	regulatory region 659887	117 bp distal
Rr659888	regulatory region 659888	453 bp proximal
Rr659889	regulatory region 659889	503 bp proximal