rs232188958 SNP Detail

Summary

• ID
  rs232188958
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:135716040 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGTGTGT GTGTGTGTGT
  TCCAGTATGC TCCAAACACA GTCTCTCTAA GTTTTTGGAG ACATCTGTGC ACACAATACT
  GTGTTCTTTT CTTCGTGCAG CCTTGATGCC TCTGCGCCTT CTGGAATTGG TGTAAGAAAT
  TATGGCTCTC AAAAATGTGG TGCATGGCTG GGTGGTGGTG GCGGCAGTGG CAGCAGCAGC
  G
  GCAGCAGCAG TGGCAGTGGC AGCGGTGGTA CACTCCTCTA ATCCCAGCAC TCAAGAGGCA
  GAGGCAAGCA GAGATCTCTG TGAGTTCAAG GCCAACTTGT CTATGGAGCA AGTTCCAGGA
  CAGCCAGGGC TGTTGTTACA CAGAGAAATC CTGTCTTGAA AGCTAAATTA AAATAATAAT
  AATAATGTGG TGCTGAATGG                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	ST/bJ	SWR/J	ZALENDE/EiJ
ss351550406	MGP_WTSI_1_137684879	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	ST/bJ	SWR/J	ZALENDE/EiJ
rs232188958					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351550406	MGP_WTSI_1_137684879	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135716040 () rs orientation: forward

Symbol	Name	Function Class
Rr419276	regulatory region 419276	9 bp distal
Rr419277	regulatory region 419277	302 bp distal
Rr419278	regulatory region 419278	326 bp proximal
Rr419279	regulatory region 419279	645 bp proximal
Rr419280	regulatory region 419280	1432 bp proximal
Rr419281	regulatory region 419281	1703 bp proximal
Tnni1	troponin I, skeletal, slow 1	Intron