rs232191543 SNP Detail

Summary

• ID
  rs232191543
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:82425832 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCTCTAGT TAGCGTTCTG
  ACAACGTTAA TTTCTTTTGT ACTGGTCATT TCTTCTTCTT GAAAAGCTGG GACAAAGTTG
  ACAGTCTTTA TAGATGAAAG GAGGTGACAG TCGGGGTTAA TCCAAATAAA TACTCACTTC
  TCTCATAAAT TTTAGGCAAC CTCATCTTAA CTTTTAAAAG AAAGACGGGA CGGGAAGAGG
  S
  GGGGAATAAA AACGAACAAT CCCAAAGCAT CACTTTGTAG TGAGCTGCAT CCCTTTTCTC
  ACCCTCCCCA GAATCTGCGG GAGGGGGCGG GGACGCTCCA CTGATAATAC CAGCTTTAAC
  TACTGGAGTT TCCCTTTGAA CAAATATTCA ATTTAACTGG AGTTAATTTA CCATAAAAGA
  CATTCCCCTT GGCGCGAATG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362190679	MGP_WTSI_4_82153499	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	C	G	G	G	G	G	C	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs232191543					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	C	G	G	G	G	G	C	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362190679	MGP_WTSI_4_82153499	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:82425832 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14398	CpG island 14398	216 bp distal
Gm11266	predicted gene 11266	394 bp upstream
Gm57123	predicted gene, 57123	1724 bp upstream
Nfib	nuclear factor I/B	844 bp upstream
Rr376744	regulatory region 376744	118 bp upstream
Rr594358	regulatory region 594358	1234 bp distal
Rr594359	regulatory region 594359	within coordinates
Rr594360	regulatory region 594360	308 bp proximal
Tssr37680	transcription start site region 37680	1641 bp downstream
Tssr37681	transcription start site region 37681	351 bp upstream
Tssr37682	transcription start site region 37682	411 bp upstream
Tssr37683	transcription start site region 37683	1989 bp upstream
Tssr42252	transcription start site region 42252	1994 bp upstream
Tssr42253	transcription start site region 42253	1905 bp upstream
Tssr42254	transcription start site region 42254	1856 bp upstream
Tssr42255	transcription start site region 42255	1793 bp upstream
Tssr42256	transcription start site region 42256	1789 bp upstream
Tssr42257	transcription start site region 42257	1757 bp upstream
Tssr42258	transcription start site region 42258	1728 bp upstream
Tssr42259	transcription start site region 42259	1121 bp upstream