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rs232210900 SNP Detail
Summary
  • ID
    rs232210900
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    Chr12:4762450 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                      CATCACTGG GAACATGAGG CCATACAGCT
    GCTAGACTCT AAGGTAACCG ACCTGCCAGG CAGTGGTACT TCCTGCCACG GTCTCTGGTG
    AAGCAGCCTA CAGACCCTGC CATGGTCTCC CCATCTACTT AGCACCCTGT GTGTGCCCTT
    S
    GTTTGTTTCT GTGCAGGGAA AAGTAATCCA TACTGTGAAG TCAGCATGGG CTCCCAAAGC
    TATACCACCA GGACCCTGCA GGACACACTA AACCCCAAGT GGAACTTCAA CTGCCAGTTC
    TTCATCAAGG ATCTTTACCA GGACGTTCTG                                 
    
    S = C/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
LG/J
SM/J
ss323874783 CHEV_12_4719256 CHEVERUD SCREENING_POP f SNP G C
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs232210900 SNP G C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr12:4762450 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Fam228a family with sequence similarity 228, member A 1220 bp downstream
Gm53750 predicted gene, 53750 203 bp upstream
Itsn2 intersectin 2 within coordinates
Rr260649 regulatory region 260649 351 bp proximal
Tssr112576 transcription start site region 112576 107 bp downstream
Tssr112577 transcription start site region 112577 73 bp downstream
Tssr115645 transcription start site region 115645 192 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory