rs232215923 SNP Detail

Summary

• ID
  rs232215923
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43085643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGCCTCATT CTTCCATTAT CAGGGATGAG
  AACAAGACAA ATGGCTCCTT ACCTAGGAGA TAGCCATGGT TTAATGTCTA GAAATGGACG
  TTAGGATAAT AGGTTGAACA AAGCTTACCT GCTCCTCACC CACCTATGCT CCAGACAATT
  Y
  TTTACCCCCC CCCCCAGTCC CTGGATTGGC CCCTTCACCC GAGACAGCAC ACACAGCTCT
  ACTCCTCTCT CTGTTTTAtt ttaatttttg gaaggacagg gtctcatgga gcccaagcta
  gccttaaact catgatccct cagcctcaga                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322196971	CHEV_7_50691589	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs232215923					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43085643 () rs orientation: forward

Symbol	Name	Function Class
Gm52993	predicted gene, 52993	228 bp downstream
Lim2	lens intrinsic membrane protein 2	223 bp downstream
Nkg7	natural killer cell group 7 sequence	919 bp upstream
Rr645958	regulatory region 645958	185 bp proximal
Rr645959	regulatory region 645959	232 bp proximal
Rr645960	regulatory region 645960	515 bp proximal
Tssr2210	transcription start site region 2210	789 bp upstream
Tssr65999	transcription start site region 65999	747 bp upstream
Tssr66000	transcription start site region 66000	913 bp upstream
Tssr66001	transcription start site region 66001	1367 bp upstream
Tssr66002	transcription start site region 66002	1381 bp upstream