rs232221396 SNP Detail

Summary

• ID
  rs232221396
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113420152 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGTGACCTT GGGAACGCCA CTGCCACttt
  tctttttcaa gtctagatcc cacggtagcg tccaggctga tctcgaactc acagccttct
  ctttagtctc ctgagtgctt ctggcttttc agggatgCAC TTGGCCTGAG AACTCCTTAA
  Y
  ATTTTTAAAG ATTTTTATTT TTAATTTCgt gtgtgtgtgt gtgtgtgtgt gtatttgtgc
  acgtgagagc aactgctcgc agaatccagt agagggcgtt ggagctggag ttacacatgg
  catttggagt ctacccgagg ttggtgctga                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321910886	CHEV_6_113393185	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs232221396					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113420152 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17844	CpG island 17844	83 bp distal
Jagn1	jagunal homolog 1	within coordinates
Rr132170	regulatory region 132170	1552 bp distal
Rr145547	regulatory region 145547	within coordinates
Rr399832	regulatory region 399832	546 bp downstream
Tssr58212	transcription start site region 58212	564 bp downstream
Tssr58213	transcription start site region 58213	556 bp downstream