rs232233505 SNP Detail

Summary

• ID
  rs232233505
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:102987816 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGGGTCGG ACACACCTGC
  CAAAACTTTC CTCAGCCCAT GCTGGATCCC GAGACAGCAA CACACTCGGG GCAAAAGTAG
  GGTGGAGTCT GAGTTATCTT AGTCTGGTGC CCAATCTGGC ATGCTTATAT GCTCAGAGGG
  ATGACCTCCG ACTCCAGGGA CTTCAAACCG AAGAAGACCA CAAGAATAGA ACAGTTACTC
  Y
  GATTTGAGAG TAGTTTTAGA GGTTAATTCG AGCATTCAGC AACTGTTTCC TAAACTCTAG
  GTGAAGTGGA ACCTCAGCTG CTTCCATGGA GTTTCCTGTG AGGGCTCAAT GTGCGGTGGG
  AGACTCTAGT GGGTACATTC GGGGTAAATT CATAAGTGTC CCCTGGGAAA TCCGTAGGCA
  CGGGTGTGTG TGTGTGTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378738081	MGP_WTSI_9_103012947	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	C	C	T	T	T	T	T	T	C	T	C	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs232233505					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	C	C	T	T	T	T	T	T	C	T	C	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378738081	MGP_WTSI_9_103012947	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:102987816 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22229	CpG island 22229	518 bp proximal
D9Mit276	DNA segment, Chr 9, Massachusetts Institute of Technology 276	147 bp proximal
Gm46128	predicted gene, 46128	within coordinates
Rab6b	RAB6B, member RAS oncogene family	1170 bp upstream
Rr401633	regulatory region 401633	1774 bp downstream
Tssr86758	transcription start site region 86758	1109 bp upstream
Tssr86759	transcription start site region 86759	1124 bp upstream
Tssr86760	transcription start site region 86760	1258 bp upstream
Tssr86761	transcription start site region 86761	1320 bp upstream
Tssr86762	transcription start site region 86762	1374 bp upstream
Tssr86763	transcription start site region 86763	1421 bp upstream
Tssr86764	transcription start site region 86764	1432 bp upstream
Tssr86765	transcription start site region 86765	1446 bp upstream
Tssr86766	transcription start site region 86766	1455 bp upstream
Tssr86767	transcription start site region 86767	1477 bp upstream