rs232242602 SNP Detail

Summary

• ID
  rs232242602
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:132067616 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCCGCCTTT GTCCGGACCG GCCCTGCCCA
  CAGTCACTGC CAATCCCTTG CTCTCCCTCT GTCCCAGGGC CACCCCTTTC TCCCACTCTG
  GGAACTAAGG CCTGTGCTTC TTCCTGTTCC CCTCATAAGC TGGCCCTAAA CTAAGTACAG
  R
  GTGAGGCCCT TTAGCCTGGA CCACACCGGA CAGGTCTCTG TCTCTACCCA ACCTGCTGAG
  TGCCAATTTC GGGGGGTGGG GGGAGGGTAG TGGGGGCAGC GCCTAGCACC TAAGAGCTAA
  TGTGCGATCT CAGGGCACAG GGCCTCGCCT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319976046	CHEV_1_134036455	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs232242602					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:132067616 () rs orientation: forward

Symbol	Name	Function Class
Cdk18	cyclin dependent kinase 18	183 bp upstream
Cpgi722	CpG island 722	48 bp distal
Gm29629	predicted gene 29629	within coordinates
Rr12249	regulatory region 12249	385 bp proximal
Rr28498	regulatory region 28498	within coordinates
Tssr13627	transcription start site region 13627	233 bp upstream
Tssr13628	transcription start site region 13628	221 bp upstream
Tssr13629	transcription start site region 13629	186 bp upstream