rs232243035 SNP Detail

Summary

• ID
  rs232243035
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:107749270 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCAATTAG TCTGAAATTA
  ATAAGAATGC CTAGGGTGGG GGTGAGGGGG AGGAGAAAAT ATACAAACTA CCTCAAGTAT
  ATGTGCTCTA CAAATAAGGC CTTTTGTTTT TAATTAAGAA ACGCAACCCC ACACTTGAAT
  TCATTAGCTC AACGTCAATT ATAAAGTTAA AAGAAAAGCA CATTATTAAC AACGCCAAAA
  R
  GAATCTAAAG CACGAATATG TGGGAACATC ACTCTCCTCC TACATTCGCC CAACCGGTAC
  AGAACCCACC AGTCACCCTC GCCCACCTCC CGGTTCTACG GGCCCGTGGG CCAGGTTCTG
  AACTCTCGCA CCTTCCTGGT TGGGTGTCTG GGTGGGCGGC CAAGGTTACT TGCAGGGCAC
  AAGAGTTCCG TATCTAGTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378856211	MGP_WTSI_9_107774402	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs232243035					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378856211	MGP_WTSI_9_107774402	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107749270 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930506F14Rik	RIKEN cDNA 4930506F14 gene			417 bp upstream
Cpgi22310	CpG island 22310			19 bp proximal
Rbm6	RNA binding motif protein 6			Intron
				Noncoding-Transcript-Variant
Rr401668	regulatory region 401668			620 bp upstream
Rr686633	regulatory region 686633			12 bp proximal
Rr686634	regulatory region 686634			428 bp proximal
Rr686635	regulatory region 686635			740 bp proximal
Tssr87026	transcription start site region 87026			889 bp upstream
Tssr91474	transcription start site region 91474			332 bp downstream
Tssr91475	transcription start site region 91475			616 bp downstream
Tssr91476	transcription start site region 91476			677 bp downstream
Tssr91477	transcription start site region 91477			712 bp downstream
Tssr91478	transcription start site region 91478			754 bp downstream