rs232254650 SNP Detail

Summary

• ID
  rs232254650
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:92473481 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCAAATATA TTACATACAT
  GTATGTATAT ATATATTTAT ATCCTTTATA TATGTATGTG TATATATTTA TATCCTTTAT
  ATCGTATACA TACATACACA CATATAAATA TATTATATAA TATTATATAT CCTTTAATTT
  CATAGTTCTG ATTTCTAAGA GGCTTGGAAT GGTGGTTTAT TCCTGGAATC CCAGCATTCA
  Y
  GTGGACTGAA GTCAGCCTTG GCTACCTAGC AAGACTCTGT CTCAAAACAA AACAAACACG
  AAATTCTAGT CTCTAGAAAA GAATTACTAG GAAAGAATTA AACACAATCC TACAACAGTA
  ATAGTCTGAC AACAGTGAAT TTTTTTTAAA CATAACCGTT GTTTCTAGCA ATGGGCCATG
  TGCTATACAA ATTATGGCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss365880987	MGP_WTSI_5_92754648	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs232254650					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365880987	MGP_WTSI_5_92754648	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:92473481 () rs orientation: forward

Symbol	Name	Function Class
Cxcl9	C-X-C motif chemokine ligand 9	within coordinates
Rr614603	regulatory region 614603	1985 bp distal
Tssr1547	transcription start site region 1547	1180 bp downstream
Tssr47288	transcription start site region 47288	1843 bp downstream
Tssr47289	transcription start site region 47289	1833 bp downstream
Tssr47290	transcription start site region 47290	1818 bp downstream
Tssr47291	transcription start site region 47291	1776 bp downstream
Tssr47292	transcription start site region 47292	495 bp downstream
Tssr47293	transcription start site region 47293	1143 bp upstream
Tssr47294	transcription start site region 47294	1180 bp upstream
Tssr51867	transcription start site region 51867	1914 bp upstream
Tssr51868	transcription start site region 51868	1868 bp upstream
Tssr51869	transcription start site region 51869	1826 bp upstream
Tssr51870	transcription start site region 51870	1776 bp upstream
Tssr51871	transcription start site region 51871	1741 bp upstream
Tssr51872	transcription start site region 51872	488 bp upstream
Tssr51873	transcription start site region 51873	1168 bp downstream
Tssr51874	transcription start site region 51874	1193 bp downstream