rs232256952 SNP Detail

Summary

• ID
  rs232256952
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:90943775 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCTCCCCC CTGGCTTTCC
  CATAGATCAC TACTGGGATT TCTCCGCACA CCATGTCCAC AACAACGAGT TTGAGAACTT
  CCCTGAGAAC CACTTCACAG AGCTGCAGAG TGTGCAGCCC CCGCAGCTAC AGCAGCTCTA
  TCGCCACATG GAGCTGGAAC AGATGCACGT CCTCGATACT CCCATGGTGC CACCCCACAC
  S
  GGCCTCAGTC ACCAGGTGTG TGCTGCTGGC TGTCCTCTGT CCACCTCCCC TCCCCACCCC
  AGACCTCCAG GCCTGTGGTG AGGCATGGAA CCTTCACAGG AAGCTGACAT AGGCTCTTAC
  TCAACGTGGC TTCCTGATCT ACAGAGCCAA CGGCAGCTGG TACCCCAACA GCTGTGCTGA
  CCTCCCGCCT GACCTTAGGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354807882	MGP_WTSI_2_90953587	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs232256952					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354807882	MGP_WTSI_2_90953587	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:90943775 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11896	CpG island 11896			1612 bp proximal
Rr373534	regulatory region 373534			within coordinates
Rr560649	regulatory region 560649			542 bp distal
Rr560650	regulatory region 560650			510 bp proximal
Rr560651	regulatory region 560651			1759 bp proximal
Rr560652	regulatory region 560652			1822 bp proximal
Spi1	Spi-1 proto-oncogene			Coding-NonSynonymous
				Coding-Synonymous
Tssr18850	transcription start site region 18850			152 bp downstream
Tssr18851	transcription start site region 18851			828 bp upstream
Tssr18852	transcription start site region 18852			885 bp upstream
Tssr18853	transcription start site region 18853			1730 bp upstream
Tssr18854	transcription start site region 18854			1765 bp upstream
Tssr18855	transcription start site region 18855			1930 bp upstream
Tssr18856	transcription start site region 18856			1977 bp upstream