rs232264535 SNP Detail

Summary

• ID
  rs232264535
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:122581834 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGCCATC TCTCTAGCCT
  CTCAGCTTTC TTCTTATACA CCCCAGGTCC ACCTGCTCAG GGGTAGCACT GCCCAGAGTG
  GGCTGGGCCC TCTCACATCA ATCAACCATC AATAAGATGT CCTCAGACAT AACCCGAATG
  CCGGTCTGAT CAAGGCAATT CCCCATTGAG TCTCCCTGAG ATAATAACTC TGGGCTGTGC
  Y
  AAGCTGTCAG CTCTAGCTAA TTAGAAGAAG AAAGAATTGG GCTGGAAAGA CAGCTCAGTG
  GTTAAGAGCA ATGGCTGCTC TCCCAGGGTC AGGTTCCAGC ATCCACCTGG CAGCTCACAA
  CTGTCTATAA CTCCTGTTCC AAGGGATTTG ACACCCTGTA CAGACATATA TACAGTCAAA
  ACACCAATGC ACATAAAATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369909482	MGP_WTSI_6_122554893	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs232264535					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369909482	MGP_WTSI_6_122554893	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:122581834 () rs orientation: forward

Symbol	Name	Function Class
Gdf3	growth differentiation factor 3	528 bp downstream
Rr380021	regulatory region 380021	1845 bp upstream
Rr399900	regulatory region 399900	464 bp downstream
Rr638223	regulatory region 638223	1941 bp distal
Rr638224	regulatory region 638224	376 bp proximal
Rr638225	regulatory region 638225	689 bp proximal
Rr638226	regulatory region 638226	797 bp proximal
Rr638227	regulatory region 638227	1967 bp proximal
Tssr62926	transcription start site region 62926	1763 bp upstream
Tssr62927	transcription start site region 62927	462 bp upstream
Tssr62928	transcription start site region 62928	1671 bp downstream