rs232278482 SNP Detail

Summary

• ID
  rs232278482
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:40160051 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTCAAATC CCAGCAACCA
  CATGGTGGCT CATAACCATC TGTAACAAGA TCTGACGCCC TCTTCTGGAG TGTCTGAAGA
  CAGCTACAGT GTACTTACAT ATAATAAATA AATAAATCTT AAAAAAAAAA AAAAAAAAGA
  AGAAGGTACC AGAAGTACTA AGAGAAAAAT CTTTGATTTT CTGGAAAACC CAGTTCTGGT
  S
  AGCTGGAGCT GAGAAAGCTG TGATTAAGAA GAGAGTACCA CCACTGAACT GAAATCTTCT
  ATGAAGTATT TCCTGAGAGT CAGCAATTTG AAGCCTTGTT CTAGTCAAGA GGAGGGGTTG
  TACCCTAAAC TGGAATTAAA AAGTAGTAGT GTAAGAGTCA CACAGAAAAT ATTAGTCTTG
  AAGGTATGGA TGTGTCATGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	ST/bJ	SWR/J	WSB/EiJ
ss398169437	MGP_WTSI_17_39986105	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	G	G	G	G	G	C	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	ST/bJ	SWR/J	WSB/EiJ
rs232278482					SNP	C	C	G	G	G	G	G	C	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398169437	MGP_WTSI_17_39986105	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:40160051 () rs orientation: forward

Symbol	Name	Function Class
AY036118	cDNA sequence AY036118	within coordinates
Cpgi9159	CpG island 9159	329 bp distal
Gm26917	predicted gene, 26917	372 bp downstream
Rn18s	18S ribosomal RNA	959 bp distal
Rn18s-rs5	18s RNA, related sequence 5	958 bp downstream
Tssr144610	transcription start site region 144610	1945 bp downstream
Tssr144611	transcription start site region 144611	1822 bp downstream
Tssr144612	transcription start site region 144612	1712 bp downstream
Tssr144613	transcription start site region 144613	1568 bp downstream
Tssr144614	transcription start site region 144614	1546 bp downstream
Tssr144615	transcription start site region 144615	1465 bp downstream
Tssr144616	transcription start site region 144616	1375 bp downstream
Tssr144617	transcription start site region 144617	1348 bp downstream
Tssr144618	transcription start site region 144618	1331 bp downstream
Tssr144619	transcription start site region 144619	1288 bp downstream
Tssr144620	transcription start site region 144620	1265 bp downstream
Tssr144621	transcription start site region 144621	1151 bp downstream
Tssr144622	transcription start site region 144622	1135 bp downstream
Tssr144623	transcription start site region 144623	1105 bp downstream
Tssr144624	transcription start site region 144624	970 bp downstream
Tssr144625	transcription start site region 144625	953 bp downstream
Tssr144626	transcription start site region 144626	924 bp downstream
Tssr144627	transcription start site region 144627	892 bp downstream
Tssr144628	transcription start site region 144628	733 bp downstream
Tssr144629	transcription start site region 144629	659 bp downstream
Tssr144630	transcription start site region 144630	650 bp downstream
Tssr144631	transcription start site region 144631	553 bp downstream
Tssr144632	transcription start site region 144632	443 bp downstream
Tssr144633	transcription start site region 144633	396 bp downstream
Tssr148065	transcription start site region 148065	1376 bp upstream
Tssr148066	transcription start site region 148066	1299 bp upstream
Tssr148067	transcription start site region 148067	1199 bp upstream
Tssr148068	transcription start site region 148068	1101 bp upstream
Tssr148069	transcription start site region 148069	918 bp upstream
Tssr148070	transcription start site region 148070	854 bp upstream
Tssr148071	transcription start site region 148071	828 bp upstream
Tssr148072	transcription start site region 148072	500 bp upstream