rs232292066 SNP Detail

Summary

• ID
  rs232292066
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:78715844 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tagagcagc ctggcctcga actcacagag
  ctccacctgc ctctgcctct ggagtgtttg gattaaaggt gtgcacctcc ttgcctggct
  TGGATTATTC TTAAATCCAA GTTCTCACTG TGACTCGGTA AAAGAAAGGG AGCTGCTATC
  M
  ACATCTCTCC CTCAAGCTAA AAAATAAAAA AATTTCTTTT CTGTTCTTTC TCTTTTGTGC
  TGCCTAGCTG TCGACAAAGA GTTTTCGAGA AAGATAAATG TTGTGTCTCT GTAAAGACAG
  AAGTAACACA AGAGGCAGGA AGGTGGAGCC                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323757666	CHEV_11_78638520	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs232292066					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:78715844 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3360	CpG island 3360	1411 bp proximal
D11Bhm78	DNA segment, Chr 11, Boehm 78	1452 bp distal
D11Bhm79	DNA segment, Chr 11, Boehm 79	440 bp distal
Gm23219	predicted gene, 23219	545 bp downstream
Lyrm9	LYR motif containing 9	1577 bp upstream
Rr452072	regulatory region 452072	1547 bp distal
Rr452074	regulatory region 452074	132 bp proximal
Rr452075	regulatory region 452075	1101 bp proximal
Rr452076	regulatory region 452076	1503 bp proximal
Rr452077	regulatory region 452077	1577 bp proximal
Rr452078	regulatory region 452078	1586 bp proximal
Rr452079	regulatory region 452079	1760 bp proximal
Tssr103332	transcription start site region 103332	1557 bp upstream