rs232317104 SNP Detail

Summary

• ID
  rs232317104
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:96142758 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATTTATTT AAAATTCATC
  CTTTATAGTC AGGATTTGAG AATCAACATA ACAAAAATGA GTATACATTT TTGTTAAAGA
  GTTTTTTAAA AGGAAACCTT AAAAGTTGTG TAATGAAAAC AGTTTTAGTG CATTTAAGTT
  ATAGGAAATA GAACATTATG TTAGATTTAA CTCTTAAAAC CAAAAGTCAA ATAAAATATA
  K
  AGAAAATGCT TAGTTGCAGA AGTTTGTAAT TGCAAAAAGG CTTCGAATGG AGTAGAGAAC
  CCCAGTTGTG CATGTTGATA GGCCATTTCT ACAGGAAACA TGAGACCTAC ACCAGAGACT
  CTCTGGATGA AAAATATGGG AGACATGTTT GGATAATTGA AGTGATATGT TTCACTTTGT
  CTGAAAAAAA TCATAAGCTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323107374	CHEV_9_96161124	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs232317104					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:96142758 () rs orientation: forward

Symbol	Name	Function Class
Tfdp2	transcription factor Dp 2	within coordinates
Tssr2975	transcription start site region 2975	1471 bp downstream
Tssr86589	transcription start site region 86589	1994 bp downstream
Tssr86590	transcription start site region 86590	1979 bp downstream
Tssr86591	transcription start site region 86591	1920 bp downstream
Tssr86592	transcription start site region 86592	1903 bp downstream
Tssr86593	transcription start site region 86593	1875 bp downstream
Tssr86594	transcription start site region 86594	1692 bp downstream
Tssr86595	transcription start site region 86595	1444 bp downstream
Tssr86596	transcription start site region 86596	1428 bp downstream