rs232322192 SNP Detail

Summary

• ID
  rs232322192
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:112064118 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGCCCGCTG AGTGCTCCCT CTTCTCTCTC TCTCTCTCTC
  CTCTCTCTCC TCTTCTCTCC TCTCCTCTCT CTCTCTCCGC TCTCTTCTCT CCTTTCTCTC
  C
  TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC CCTCGCTCGC AGGATTTCGA
  TCTCTCTGGC TGAGTAGGTC CACCTGAGGG TCACTCTCG                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323199027	CHEV_9_112137554	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs232322192					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:112064118 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
2900079G21Rik	RIKEN cDNA 2900079G21 gene			within coordinates
Arpp21	cyclic AMP-regulated phosphoprotein, 21			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Cpgi22409	CpG island 22409			within coordinates
Gm68368	predicted gene, 68368			within coordinates
Rr687421	regulatory region 687421			717 bp distal
Rr687422	regulatory region 687422			43 bp distal
Rr687423	regulatory region 687423			within coordinates
Tssr87517	transcription start site region 87517			799 bp downstream
Tssr87518	transcription start site region 87518			737 bp downstream
Tssr91798	transcription start site region 91798			1922 bp upstream
Tssr91799	transcription start site region 91799			1796 bp upstream
Tssr91800	transcription start site region 91800			1781 bp upstream
Tssr91801	transcription start site region 91801			1764 bp upstream
Tssr91802	transcription start site region 91802			1727 bp upstream
Tssr91803	transcription start site region 91803			1638 bp upstream
Tssr91804	transcription start site region 91804			1480 bp upstream
Tssr91805	transcription start site region 91805			431 bp upstream
Tssr91806	transcription start site region 91806			406 bp upstream
Tssr91807	transcription start site region 91807			228 bp upstream
Tssr91808	transcription start site region 91808			192 bp upstream
Tssr91809	transcription start site region 91809			147 bp upstream
Tssr91810	transcription start site region 91810			83 bp upstream
Tssr91811	transcription start site region 91811			92 bp downstream
Tssr91812	transcription start site region 91812			402 bp downstream
Tssr91813	transcription start site region 91813			461 bp downstream
Tssr91814	transcription start site region 91814			780 bp downstream
Tssr91815	transcription start site region 91815			804 bp downstream
Tssr91816	transcription start site region 91816			839 bp downstream
Tssr91817	transcription start site region 91817			850 bp downstream
Tssr91818	transcription start site region 91818			869 bp downstream
Tssr91819	transcription start site region 91819			890 bp downstream
Tssr91820	transcription start site region 91820			916 bp downstream