rs232326136 SNP Detail

Summary

• ID
  rs232326136
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:4539315 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAGCTTTT CTGAATTTTT
  AATCAAACCT TCCCACTGAT GCTACCAAAT GACACTAGAA TCCAGTACAC TACAGAGAAG
  AGAATGAGGT CTGACTCCAT CTCACAGTTT CAGATTCTAA TGAGGGAAAC ATTTGCAGTG
  ATGCATAACT GAGTCAGATG CTCTTCTTGG ATGGCCCTGC CCTCCCTAGG CAGAGCTTAT
  R
  GTCCTTTAAC AAGTGTGCCA AGTTTCCTTT AAAAGCACCC TTCTCCTAAG CCCGGGCTCT
  GACTCCATTC TGTCTCCTGT ATGCATGTAT TTATTTGAGT TTTAGTATGA GGCGTCTATT
  TAAGAGTTCA CACCTTCTTC TCCATAGTTT GAATACAACG TAGAAGGGGT GTCCTCCAAG
  GAAATGGCAA CTCAGCTCGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367230144	MGP_WTSI_6_4489315	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs232326136					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367230144	MGP_WTSI_6_4489315	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:4539315 () rs orientation: forward

Symbol	Name	Function Class
Col1a2	collagen, type I, alpha 2	within coordinates
Tssr1769	transcription start site region 1769	1335 bp downstream
Tssr1770	transcription start site region 1770	647 bp downstream
Tssr54726	transcription start site region 54726	1517 bp downstream
Tssr54727	transcription start site region 54727	1436 bp downstream
Tssr54728	transcription start site region 54728	1359 bp downstream
Tssr54729	transcription start site region 54729	1305 bp downstream
Tssr54730	transcription start site region 54730	670 bp downstream
Tssr54731	transcription start site region 54731	625 bp downstream
Tssr54732	transcription start site region 54732	538 bp downstream
Tssr54733	transcription start site region 54733	152 bp upstream
Tssr54734	transcription start site region 54734	163 bp upstream
Tssr54735	transcription start site region 54735	177 bp upstream
Tssr54736	transcription start site region 54736	201 bp upstream
Tssr54737	transcription start site region 54737	223 bp upstream
Tssr54738	transcription start site region 54738	261 bp upstream
Tssr54739	transcription start site region 54739	276 bp upstream
Tssr54740	transcription start site region 54740	340 bp upstream
Tssr54741	transcription start site region 54741	691 bp upstream
Tssr54742	transcription start site region 54742	1213 bp upstream
Tssr54743	transcription start site region 54743	1228 bp upstream
Tssr54744	transcription start site region 54744	1259 bp upstream
Tssr54745	transcription start site region 54745	1271 bp upstream
Tssr54746	transcription start site region 54746	1284 bp upstream
Tssr54747	transcription start site region 54747	1315 bp upstream
Tssr54748	transcription start site region 54748	1359 bp upstream
Tssr54749	transcription start site region 54749	1528 bp upstream
Tssr54750	transcription start site region 54750	1541 bp upstream
Tssr54751	transcription start site region 54751	1549 bp upstream
Tssr54752	transcription start site region 54752	1592 bp upstream
Tssr54753	transcription start site region 54753	1614 bp upstream
Tssr54754	transcription start site region 54754	1723 bp upstream
Tssr59718	transcription start site region 59718	1406 bp downstream
Tssr59719	transcription start site region 59719	1474 bp downstream