rs232327683 SNP Detail

Summary

• ID
  rs232327683
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:122826594 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATTCAGAA CAATAAGAGC
  AGCCTTCCAT GCAAACTAGA AGTTTAGATG ATGCTAAGGA AAAAAAAAGA ATACTGAAAA
  CAGATGAAAA AGTTATTCAT TGCACATGGT GTAGTCAGGG ATGGGAATAG ACTAAGCCAA
  ATGAGGTAAA ACTTAACACT GATGGAAACA AGAAGGCCTG TTAAAACACT GGTCCCATGG
  R
  CCAGAGATTC TGAGTCAACA CATCTGGGAT GGGGCTTGAA ATTTTGCATC TTTAATGTTT
  TCAAATGATG CTGATGTCAA TAAGAGACCT TTCTCTGAGA GTCGCCAAAT TGTCTAAAGT
  GTCCTGCTCA CATGTCATCC ATCACTGTTC ACCTGAGAAC TCTGCTTAGG TTCCCAGGGC
  CACATCTTCA CACATCTGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369914775	MGP_WTSI_6_122799653	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs232327683					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369914775	MGP_WTSI_6_122799653	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:122826594 () rs orientation: forward

Symbol	Name	Function Class
C3ar1	complement component 3a receptor 1	within coordinates
Tssr58709	transcription start site region 58709	1659 bp downstream
Tssr58710	transcription start site region 58710	1439 bp downstream
Tssr58711	transcription start site region 58711	822 bp upstream
Tssr58712	transcription start site region 58712	940 bp upstream
Tssr58713	transcription start site region 58713	996 bp upstream
Tssr62966	transcription start site region 62966	1849 bp upstream
Tssr62967	transcription start site region 62967	1804 bp upstream
Tssr62968	transcription start site region 62968	1756 bp upstream
Tssr62969	transcription start site region 62969	1436 bp upstream
Tssr62970	transcription start site region 62970	1416 bp upstream
Tssr62971	transcription start site region 62971	1356 bp upstream
Tssr62972	transcription start site region 62972	1256 bp upstream
Tssr62973	transcription start site region 62973	1195 bp upstream
Tssr62974	transcription start site region 62974	1109 bp upstream
Tssr62975	transcription start site region 62975	1024 bp upstream
Tssr62976	transcription start site region 62976	935 bp upstream
Tssr62977	transcription start site region 62977	877 bp upstream
Tssr62978	transcription start site region 62978	823 bp upstream
Tssr62979	transcription start site region 62979	790 bp upstream
Tssr62980	transcription start site region 62980	774 bp upstream
Tssr62981	transcription start site region 62981	755 bp upstream
Tssr62982	transcription start site region 62982	596 bp upstream
Tssr62983	transcription start site region 62983	138 bp upstream
Tssr62984	transcription start site region 62984	42 bp upstream
Tssr62985	transcription start site region 62985	3 bp upstream
Tssr62986	transcription start site region 62986	275 bp downstream
Tssr62987	transcription start site region 62987	405 bp downstream
Tssr62988	transcription start site region 62988	473 bp downstream
Tssr62989	transcription start site region 62989	632 bp downstream
Tssr62990	transcription start site region 62990	678 bp downstream
Tssr62991	transcription start site region 62991	705 bp downstream
Tssr62992	transcription start site region 62992	730 bp downstream
Tssr62993	transcription start site region 62993	824 bp downstream
Tssr62994	transcription start site region 62994	930 bp downstream
Tssr62995	transcription start site region 62995	1047 bp downstream
Tssr62996	transcription start site region 62996	1107 bp downstream
Tssr62997	transcription start site region 62997	1249 bp downstream
Tssr62998	transcription start site region 62998	1304 bp downstream
Tssr62999	transcription start site region 62999	1375 bp downstream
Tssr63000	transcription start site region 63000	1432 bp downstream
Tssr63001	transcription start site region 63001	1455 bp downstream