rs232329190 SNP Detail

Summary

• ID
  rs232329190
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:72306450 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGACGGCCA GTCTCAGGAC
  CTCGGCAGCC ACTTTCGCGC CACTTCCCAG GACCGCGCAG CTTCATAAAA AGCCAGTGGC
  ACTGAGTTCC CACAACGCCA CTGTTTCATA GAACATTCAG CAGTTTCCGA GGACACTCAA
  GGTTATTACA ACCACGAGAA CCGCTTCTAT TTTTTTCCAG AGCTGGGACG CTTCGGGTAC
  Y
  GCTAAAGAGG TCATCTTAGC TGGCAGGACC TGCGTCCCGG CGCGGGAAAG CCGGTGGCCC
  CGCCCCTCCG GCGGCGGAGT GCGCGCCCCG CCTCTGTCCC GGAGCTCGGG TTGTTCGGGC
  TCTGAGTGCT GGTGTGTTCC GACGAACTAT CCCCGTTCCG AGTGCCTGGG TACCCGCCGC
  CAACATGGAG GCTCGCCGCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354439983	MGP_WTSI_2_72314163	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs232329190					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354439983	MGP_WTSI_2_72314163	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72306450 () rs orientation: forward

Symbol	Name	Function Class
Cdca7	cell division cycle associated 7	90 bp upstream
Cpgi11756	CpG island 11756	within coordinates
Rr397036	regulatory region 397036	40 bp downstream
Rr558978	regulatory region 558978	821 bp distal
Rr558979	regulatory region 558979	within coordinates
Rr558980	regulatory region 558980	64 bp proximal
Tssr18351	transcription start site region 18351	106 bp downstream
Tssr18352	transcription start site region 18352	67 bp upstream
Tssr18353	transcription start site region 18353	107 bp upstream
Tssr18354	transcription start site region 18354	119 bp upstream