rs232335849 SNP Detail

Summary

• ID
  rs232335849
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:57011793 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GAGATAGGA GGGCGATCGc ctcccccacc
  caccgcctcc gcccaccacc caccgcctcc gccccTCGGA GCAACTTTTC TCGGTGCGAG
  CGAGCTCCCC ATCTGCTCGG AGCCGACCGG CCCGGCCCGA AGCGCTCCCG GCCGCGTTTG
  R
  GGAAGGCCAC TTCTCCCTCA AATCCCGTGC GGCCGCGGGT CCGGAACAAT AGCCCGGGTG
  TCCCGAACGC CTGGAGCGAG ACTCCGCCCG TCCGGCTGGC TGTGGGTCCG GCACTGGAGA
  AAGGGTTGCT CCGTGGGCAC AAGGCAGGCT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319733553	CHEV_1_57029478	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs232335849					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:57011793 () rs orientation: forward

Symbol	Name	Function Class
9130024F11Rik	RIKEN cDNA 9130024F11 gene	within coordinates
Cpgi268	CpG island 268	1417 bp distal
Cpgi269	CpG island 269	within coordinates
Rr411277	regulatory region 411277	1718 bp distal
Rr411278	regulatory region 411278	1144 bp distal
Rr411279	regulatory region 411279	787 bp distal
Rr411280	regulatory region 411280	286 bp distal
Rr411281	regulatory region 411281	within coordinates
Satb2	special AT-rich sequence binding protein 2	within coordinates
Tssr6736	transcription start site region 6736	1129 bp downstream
Tssr6737	transcription start site region 6737	590 bp downstream
Tssr6738	transcription start site region 6738	428 bp downstream
Tssr6739	transcription start site region 6739	45 bp downstream
Tssr6740	transcription start site region 6740	1398 bp upstream
Tssr11747	transcription start site region 11747	1356 bp upstream
Tssr11748	transcription start site region 11748	1329 bp upstream
Tssr11749	transcription start site region 11749	1305 bp upstream
Tssr11750	transcription start site region 11750	1287 bp upstream
Tssr11751	transcription start site region 11751	925 bp upstream
Tssr11752	transcription start site region 11752	895 bp upstream
Tssr11753	transcription start site region 11753	874 bp upstream
Tssr11754	transcription start site region 11754	853 bp upstream
Tssr11755	transcription start site region 11755	422 bp upstream
Tssr11756	transcription start site region 11756	380 bp upstream
Tssr11757	transcription start site region 11757	152 bp upstream
Tssr11758	transcription start site region 11758	1866 bp downstream