rs232372391 SNP Detail

Summary

• ID
  rs232372391
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:122827427 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTATTGCCA TCAGCGGTGT
  CGGCACATGA TTGTCATACG TGAATTGGTC AACATAATCC CCCTGGAAAT CATAGGGGTA
  TAAATGACCA CTAGAAGCAG TAGGGAAAAG TTCTGTGTGA GCAGAGAGAA AAGCGTCAGC
  GTTCAGTGTA TTGGATTTAC GATCTTCAAC AGGAAACCCG CTGGGTACGG CGGCTGTGAG
  S
  ACATTAGGAG GCTTTCCACC ATAATGGGGT TGTTGGTTTG CTGAATCTAG AGAGAATGAG
  TCTTCAGGAG ATGTTAGGAA TGGCTGTGAC TGGAGGGCAG TGGTAACTGT CCAAAAGTAA
  TCCCTTGCCT GTACAGAGGA AGGAGCTGAC CTGTCATTCA TATGTCCAGT TAGCTGAGCA
  GTGGAGTTAT CAGTAGAATT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321934553	CHEV_6_122800486	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs232372391					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:122827427 () rs orientation: forward

Symbol	Name	Function Class
C3ar1	complement component 3a receptor 1	within coordinates
Tssr58711	transcription start site region 58711	within coordinates
Tssr58712	transcription start site region 58712	107 bp upstream
Tssr58713	transcription start site region 58713	163 bp upstream
Tssr62974	transcription start site region 62974	1942 bp upstream
Tssr62975	transcription start site region 62975	1857 bp upstream
Tssr62976	transcription start site region 62976	1768 bp upstream
Tssr62977	transcription start site region 62977	1710 bp upstream
Tssr62978	transcription start site region 62978	1656 bp upstream
Tssr62979	transcription start site region 62979	1623 bp upstream
Tssr62980	transcription start site region 62980	1607 bp upstream
Tssr62981	transcription start site region 62981	1588 bp upstream
Tssr62982	transcription start site region 62982	1429 bp upstream
Tssr62983	transcription start site region 62983	971 bp upstream
Tssr62984	transcription start site region 62984	875 bp upstream
Tssr62985	transcription start site region 62985	836 bp upstream
Tssr62986	transcription start site region 62986	541 bp upstream
Tssr62987	transcription start site region 62987	415 bp upstream
Tssr62988	transcription start site region 62988	349 bp upstream
Tssr62989	transcription start site region 62989	189 bp upstream
Tssr62990	transcription start site region 62990	136 bp upstream
Tssr62991	transcription start site region 62991	107 bp upstream
Tssr62992	transcription start site region 62992	57 bp upstream
Tssr62993	transcription start site region 62993	within coordinates
Tssr62994	transcription start site region 62994	97 bp downstream
Tssr62995	transcription start site region 62995	214 bp downstream
Tssr62996	transcription start site region 62996	274 bp downstream
Tssr62997	transcription start site region 62997	416 bp downstream
Tssr62998	transcription start site region 62998	471 bp downstream
Tssr62999	transcription start site region 62999	542 bp downstream
Tssr63000	transcription start site region 63000	599 bp downstream
Tssr63001	transcription start site region 63001	622 bp downstream