rs232375231 SNP Detail

Summary

• ID
  rs232375231
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:38703659 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCATGAGGG AGAGTGGCCT
  TAGGCTTCCC ACAGTCTCCT TTGTGTAGGT CCTGAAGTCA CCGGCAAGGC CACCCTCAGA
  TCCTCCCTGG GACCTTGACT TGGGTTCTTT CATTGAGGTA TAGCTGGTGA CCTACATGAG
  GTTCAGACAT ATTGCCTAAG ACCACTGGGC CCAATTGGCA TCACAGATGT ATGTGAGAAC
  W
  TGTTTACCTC TAGATTGTGT CTTCTTTGCA TGCCACACAT GCATACACAC ACACACACAC
  ACACACACAC ACACACACAC ACACACACAC ACACGTTATG ACCTTCCCTG GTTATGTTCC
  ACATCTGCCT GTCCCATTAT CTAGCCATGC ACCAGGTCAC GATTCTCTCT ATGGAGCAGG
  CTAGGAATGC TCTCAACTGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss349302316	MGP_WTSI_1_38721423	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs232375231					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss349302316	MGP_WTSI_1_38721423	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:38703659 () rs orientation: forward

Symbol	Name	Function Class
Aff3	AF4/FMR2 family, member 3	within coordinates
Rr366875	regulatory region 366875	390 bp upstream
Rr409724	regulatory region 409724	1459 bp distal
Rr409725	regulatory region 409725	within coordinates
Rr409726	regulatory region 409726	367 bp proximal
Rr409727	regulatory region 409727	965 bp proximal
Rr409728	regulatory region 409728	1673 bp proximal
Tssr11346	transcription start site region 11346	344 bp downstream
Tssr11347	transcription start site region 11347	356 bp downstream
Tssr11348	transcription start site region 11348	369 bp downstream
Tssr11349	transcription start site region 11349	427 bp downstream
Tssr11350	transcription start site region 11350	445 bp downstream
Tssr11351	transcription start site region 11351	1014 bp downstream