rs232376555 SNP Detail

Summary

• ID
  rs232376555
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:78700009 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCGCGCCGG GCGCCGCGCT
  CCTCAGTCCG CCGCGCTAGT CAGTCAGCGG CGCGGGGCGG CGGGTCCCGC ATCCCCCGGC
  GGGCGGGCGC AGTGGCGCGG TCCCCTGCGC GGCCCTCCCC ACAAAGGACC GCGGAGCTGC
  GTGGCCCAGT GCTCGCCCCG GGGCGGGCCG CGCCAATTTG TTGCACTTCT GGGGGTGGGG
  R
  GTGGGGGAGG GCTTTTGTTT GTTTGTTTGT TTTGCCCTCG GGGTTTTGGC CGCTTTGCGG
  ATTTTTTTTT TTTTTTTTAA AATAACAAAA TGTCGGTCGG TGAGGGAGGA ATTGAGCGGG
  GAACGTCGAT GGCACCGGGA GCTTTGCAGA AGGTGCAGTT TGGAGCCTGC CCTTCCCCGG
  GTGGCAGCTC GGGCTCGGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss354575689	MGP_WTSI_2_78709822	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs232376555					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354575689	MGP_WTSI_2_78709822	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:78700009 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11839	CpG island 11839			within coordinates
Rr559887	regulatory region 559887			608 bp distal
Rr559888	regulatory region 559888			733 bp distal
Rr559889	regulatory region 559889			within coordinates
Rr559890	regulatory region 559890			450 bp distal
Tssr18521	transcription start site region 18521			909 bp downstream
Tssr18522	transcription start site region 18522			857 bp downstream
Tssr18523	transcription start site region 18523			556 bp downstream
Tssr18524	transcription start site region 18524			523 bp downstream
Tssr18525	transcription start site region 18525			502 bp downstream
Tssr18526	transcription start site region 18526			403 bp downstream
Tssr18527	transcription start site region 18527			344 bp downstream
Tssr18528	transcription start site region 18528			289 bp downstream
Tssr18529	transcription start site region 18529			154 bp downstream
Ube2e3	ubiquitin-conjugating enzyme E2E 3			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant