rs232381607 SNP Detail

Summary

• ID
  rs232381607
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:57816436 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATGT ATCTAATAGA CACTGCTTAG
  Y
  CACTGTTGCT TCCCTGGTGA CCATC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319735617	CHEV_1_57834121	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs232381607					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:57816436 () rs orientation: forward

Symbol	Name	Function Class
Cpgi274	CpG island 274	1505 bp distal
Rr411361	regulatory region 411361	1216 bp distal
Rr411363	regulatory region 411363	1875 bp distal
Rr411364	regulatory region 411364	271 bp distal
Spats2l	spermatogenesis associated, serine-rich 2-like	within coordinates
Tssr6750	transcription start site region 6750	205 bp downstream