rs232400366 SNP Detail

Summary

• ID
  rs232400366
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:53800077 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCTAGTTAG TAGGCACAGT TTCTGATGGT
  AGGTGTTGCT GGCACCCTCA ACCCAACATT AGCAAGGAAG AATGTTTTGA ACTCTACAGA
  TAAAAGGGTA GCACACAGCA CTCAGATTCC CTCTCCaaaa aaaaaaaaaa aaaaaaaaaa
  K
  GGACAGGTAC CACATCCATC CACAAGTTTA CCTTCTTGAG AAGCATGTGG CCTAAGGTCA
  GCTTTACAAG TGAGTGGCAT TTAAATAATG CAGGGCACAT TGATAAGACA TTTTTATAAT
  ATGATATGCC CAGGTGTTTG GTTTATTTAC                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321801884	CHEV_6_53773086	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs232400366					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:53800077 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17455	CpG island 17455	1958 bp distal
Gm16499	predicted gene 16499	634 bp upstream
Gm68353	predicted gene, 68353	1863 bp upstream
Rr630655	regulatory region 630655	1491 bp distal
Tssr61067	transcription start site region 61067	1833 bp upstream