rs232415390 SNP Detail

Summary

• ID
  rs232415390
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:32418340 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTAGAAAAG GATAATAATC
  AACTACCCGT ATCTCTGGAA ACACAAAGGA AAGTGATACA GATCTGATAC ATTTAAACAG
  TAAGTTTCTC TGAAACAATA TTATGTCTCC CAACTAAGAC ATTCAAAGAG CAAAGATGAT
  TAGGGATATT GGAGGCAGGG TAATGAAATC ATCTTTTTAA ATAGATTAAC TACTTAGATA
  K
  AACGGACCAT GTCATTCTGA CCCTAACTTG TCATCCAGAT TCTCTGTTAG ATCATAGAGA
  AAGGACAGGG CAGGATATCA AAACATCTGG ATATAGAAAA TCAGCAATAT ACATAGAGAA
  CCGAATCAGC ATGCTCCCAA GACATGCCTG GGCTTGTTTC TCACATGCTT ACTCCCACCT
  GATGAAACCC CAGCATGCGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320697908	CHEV_3_32263113	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs232415390					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32418340 () rs orientation: forward

Symbol	Name	Function Class
4930429B21Rik	RIKEN cDNA 4930429B21 gene	1298 bp upstream
Cpgi13055	CpG island 13055	753 bp proximal
Rr77496	regulatory region 77496	within coordinates
Rr374783	regulatory region 374783	within coordinates
Tssr28742	transcription start site region 28742	201 bp upstream
Tssr28743	transcription start site region 28743	720 bp upstream
Tssr28744	transcription start site region 28744	1115 bp upstream
Tssr28745	transcription start site region 28745	1145 bp upstream
Tssr32923	transcription start site region 32923	953 bp downstream
Tssr32924	transcription start site region 32924	992 bp downstream
Tssr32925	transcription start site region 32925	1232 bp downstream
Tssr32926	transcription start site region 32926	1417 bp downstream
Tssr32927	transcription start site region 32927	1452 bp downstream
Tssr32928	transcription start site region 32928	1701 bp downstream
Zmat3	zinc finger matrin type 3	within coordinates