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rs232416009 SNP Detail
Summary
  • ID
    rs232416009
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr5:123128488 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TAGCAGATCC CCAATGTTCC
TCCGTCTTTT AAGTAGTGCT TGTGACTGCT TCCAGAATTG ACTGACCCTC AGTGGTCCTG
GAATTCCTTT AAGTTGAGAG AAATGCTGGC CCTAAACTTT GTTTCCCTCC GGGCCTCTTC
CTTTCTTGCA AGGGCCTAAT GACAGCATCA CAAGGATGTT CTGAGAGACC TCCCAGGTGA
Y
GCTAGCTTGG CGTACAAGCT AAAGCAGGTC ATTTTGCACC CTGGAGAAAC CCAGATTCAA
GAAATTATGA GTTTAGGTGA CTGCTGTTTT TATCTTGTCC CAATGTCAAG AGCACTGGTT
CAGACAGATA CGGGGAGGAA GTGGCCTTGC CACCTGAAAT CAGCTGTGAA CCACACATCG
TCACCCTCCC TTACGTCAGA                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss366530171 MGP_WTSI_5_123440434 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs232416009 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss366530171 MGP_WTSI_5_123440434 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr5:123128488 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
A930024E05Rik RIKEN cDNA A930024E05 gene within coordinates
Cpgi16565 CpG island 16565 1696 bp distal
Cpgi16566 CpG island 16566 892 bp distal
Gm44574 predicted gene 44574 within coordinates
Gm73435 predicted gene, 73435 381 bp upstream
Kdm2b lysine (K)-specific demethylase 2B 1155 bp upstream
Rr620030 regulatory region 620030 1903 bp distal
Rr620031 regulatory region 620031 1402 bp distal
Rr620032 regulatory region 620032 1277 bp distal
Rr620033 regulatory region 620033 1130 bp distal
Rr620034 regulatory region 620034 629 bp distal
Rr620035 regulatory region 620035 484 bp distal
Rr620036 regulatory region 620036 within coordinates
Rr620037 regulatory region 620037 392 bp proximal
Tssr48730 transcription start site region 48730 1173 bp downstream
Tssr48731 transcription start site region 48731 1144 bp downstream
Tssr48732 transcription start site region 48732 1110 bp downstream
Tssr48733 transcription start site region 48733 1059 bp downstream
Tssr48734 transcription start site region 48734 813 bp downstream
Tssr48735 transcription start site region 48735 686 bp downstream
Tssr48736 transcription start site region 48736 663 bp downstream
Tssr48737 transcription start site region 48737 482 bp downstream
Tssr48738 transcription start site region 48738 333 bp upstream
Tssr48739 transcription start site region 48739 350 bp upstream
Tssr48740 transcription start site region 48740 365 bp upstream
Tssr48741 transcription start site region 48741 430 bp upstream
Tssr53169 transcription start site region 53169 1899 bp upstream
Tssr53170 transcription start site region 53170 1720 bp upstream
Tssr53171 transcription start site region 53171 1345 bp upstream
Tssr53172 transcription start site region 53172 1314 bp upstream
Tssr53173 transcription start site region 53173 1145 bp upstream
Tssr53174 transcription start site region 53174 1087 bp upstream
Tssr53175 transcription start site region 53175 135 bp upstream
Tssr53176 transcription start site region 53176 18 bp upstream
Tssr53177 transcription start site region 53177 35 bp downstream
Tssr53178 transcription start site region 53178 52 bp downstream
Tssr53179 transcription start site region 53179 93 bp downstream
Tssr53180 transcription start site region 53180 108 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory