rs232417627 SNP Detail

Summary

• ID
  rs232417627
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:45453299 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCAGTACA GATCCTAGCC
  CTGGGGAGGT AGAGACAAAG AATGTAGTCA TTTTAGCTAC ACATCAAATG CAAAGCTAGC
  CTGGGCTACA TGTAGTAGGC TCAAAGCTCA TACCTCCATC ATCTTAAAAC GGGGCTCCAT
  TGTGTGTGCT GGCTAACCTC AAACTCAGGA CCCATCTGCC TCTGCTTCTT GAGTGCTGGG
  R
  ATAACCTGTA TGTATTATCA TGCCCAGCTT TGAAGTCTTT GATTCGCCCA CTGGGGCCTG
  TCATGGGAAC TGAGATTGCA TTTTACCAAA TTAACATTTG TTTTTCCTGT TTGTCACTTA
  GATTTTCCTC AAAGTTTGGA GTTGGCATCA TTTTCTGTGC TAAGTACAGG GATATATATG
  ACGGGGCATA CGATAGAGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323284508	CHEV_10_45297009	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs232417627					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:45453299 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1519	CpG island 1519	440 bp proximal
Gm3805	predicted gene 3805	281 bp downstream
Hace1	HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1	626 bp upstream
Rr224766	regulatory region 224766	301 bp proximal
Tg(SRY-YFP,Tyr)TashTNpln	transgene insertion TashT, Nicolas Pilon	626 bp proximal
Tssr93194	transcription start site region 93194	608 bp upstream
Tssr93195	transcription start site region 93195	713 bp upstream
Tssr97528	transcription start site region 97528	897 bp downstream
Tssr97529	transcription start site region 97529	918 bp downstream