rs232422509 SNP Detail

Summary

• ID
  rs232422509
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:116149159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTCAATGG TGAAGAGTCA
  GCAGGGGCTG AGCAGAGCTC CCTCAACTGT TCCTGAGACA ACTGACATGA AGTTAAATGT
  TAGGTGTAAA ACCCTGCCCA TCTCACCAGC TCTGGCAACT CCAGCGTGCT CCAGAACTAA
  GATTTTAAAA ACATAGGGAT ATTGGTAATC CCAGCTGTTG GGAGCATCGA TTTTTGTAAG
  Y
  AAATCTAGTT TAGGATCAAT ATCAAATCTG TGTCTTTTGT GATTACCTAA TAGCTAAAAG
  CTATCCAAAG GTATGTATGT CAGTGGCACC TAGAATGTAC AACCTAGGAA AAAGCTGAGC
  ACAGATTCCA GACTCCTAGT ATCTTCTAAT AGTATTTTCT GGTTGGAGCT TCAGTATTGA
  ACCAGGCACC TGATGGATGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323487236	CHEV_10_115750310	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs232422509					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:116149159 () rs orientation: forward

Symbol	Name	Function Class
Ptprb	protein tyrosine phosphatase receptor type B	within coordinates
Tssr95861	transcription start site region 95861	1801 bp upstream