rs232428400 SNP Detail

Summary

• ID
  rs232428400
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:84574433 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTGTGTG TGTGTGTTTA
  ACATGAGTTA TTGAACTATG GGCATCTACT TTTGTATTTA GTTGATGTAT TGGTCCCCTA
  TCAGCTACTG TAACAAAGTA TCCAGGGTGA TCATATTAGA AAGAGCAAAG GTTTGTTTTG
  CCTCCCACTT CCAGAGATTT CAATCTCTGC CTGGCTTTTG CTTTTGTAGC TATATTGACA
  Y
  AGCACGTAGG GAACATGAGG AAGACAGTTC TGGCCCCAAC AAGGGACCCA AAGAGAGGAA
  GGAATAACAT TACCTATTCC CCCCCCCCCC CCAAGAGCAC ACTGACAATG GTACGTGGTA
  GAACACCCAG GTAGCTTCAC CTCTTAAAGG TGCCACCATT TCCCAATAGC ACCACAGGCC
  TTTAACACAT AGGTCTTTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325261882	CHEV_16_84777790	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs232428400					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:84574433 () rs orientation: forward

Symbol	Name	Function Class
Jam2	junction adhesion molecule 2	within coordinates
Rr392068	regulatory region 392068	636 bp upstream