rs232440583 SNP Detail

Summary

• ID
  rs232440583
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:133987732 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tttacacag agggaaacca aggttcagaa
  tgggtaaccg ttgctcaagg tgctaatcag ccagtaggtg gcagagAACA GTGGCAGCCC
  TGCCCACCTC TTTCTCAAAT CTTGAACTGG ATGCTATGGT GCTGACTGCT GAGTCTATAG
  R
  AGCATGTGCG CTTATGTGTG GTGGGGTTAG GGAACACACA CGATATTTTC GTTGTCGTAT
  TCCAAGTTTA CTGAAAATAT TACAGCACAA CTGAAGATTC CATCTAGTGT TTTGACCTTC
  ATCCCAGCTG AGAGACCAGC AGGCAGAACT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319981822	CHEV_1_135956571	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs232440583					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:133987732 () rs orientation: forward

Symbol	Name	Function Class
Cpgi758	CpG island 758	924 bp proximal
Gm19497	predicted gene, 19497	46 bp downstream
Gm57140	predicted gene, 57140	1054 bp upstream
Rr1740	regulatory region 1740	200 bp upstream
Rr12446	regulatory region 12446	within coordinates
Tssr8846	transcription start site region 8846	1078 bp upstream
Tssr8847	transcription start site region 8847	1101 bp upstream
Tssr8848	transcription start site region 8848	1142 bp upstream
Tssr13763	transcription start site region 13763	817 bp downstream
Tssr13764	transcription start site region 13764	868 bp downstream
Tssr13765	transcription start site region 13765	916 bp downstream