rs232445189 SNP Detail

Summary

• ID
  rs232445189
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:86585258 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGCTCCCT GGCTGACCCA
  CAGTTTCAGC AGGCCTCAAC CCTGATCCCA GGGCCCCAGA CCTCGTCCTT CCCTAAAAAG
  ACCAGCCCGG CGTGGCCAGC AGCTTGCCAG GAGCAAGGGT GGACCATGTG CTAGCAGAGG
  CCCTCCTTAG CACCGTTTCT GAGCAAGGCC AGAGCCTTTC CAGAGAGGAA CGCAAGCAAG
  R
  CCTGATAGGT GACACCAGAC AGACACAAAG ATGACCAGTA GCAACCGAGG ACTCTCCAGT
  GTCGCTGGTC CTCATGCCCT GGACCTTCAG GGCCTGATTC CCCAGTGTGG AGAGGCTGGT
  GAGAGCTGTC AACATCACTC ATGGCCCTCT GAATGAATGA GGGCCTGGGG GGTCCCCACT
  CAGCACAGCT AGGCTGGGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369088631	MGP_WTSI_6_86558270	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs232445189					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369088631	MGP_WTSI_6_86558270	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86585258 () rs orientation: forward

Symbol	Name	Function Class
Gm67306	predicted gene, 67306	574 bp upstream
Gm67317	predicted gene, 67317	729 bp downstream
Rr150658	regulatory region 150658	within coordinates
Rr368114	regulatory region 368114	469 bp downstream
Tssr1919	transcription start site region 1919	490 bp downstream
Tssr57493	transcription start site region 57493	430 bp downstream
Tssr57494	transcription start site region 57494	1286 bp upstream
Tssr61819	transcription start site region 61819	720 bp upstream
Tssr61820	transcription start site region 61820	638 bp upstream
Tssr61821	transcription start site region 61821	622 bp upstream
Tssr61822	transcription start site region 61822	598 bp upstream
Tssr61823	transcription start site region 61823	555 bp upstream
Tssr61824	transcription start site region 61824	1039 bp downstream
Tssr61825	transcription start site region 61825	1065 bp downstream