rs232461473 SNP Detail

Summary

• ID
  rs232461473
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156313274 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGCCCGGA TTGGCCCCTT
  TTGAGGGAAA CCTTCCAGTG AGGGCCCAGG TTTCCTAGGC CCAAGGCAAT GAGCCTTGGG
  GTAGAATAGG TATCTCCTGA TTGGACCAGG AGCCCCCATC TCAGCACCCT GCATAGACCT
  GGCCAGAAGG GCCTGCTCTG TATACACCCG CACACTTGTA TTCAGACTGG AGGAGCCTAG
  M
  CGTTGGAGTT CTATGGAGGC AGGGATTCTC CAGTTGCCCC TCCCCTGCCA GGGTGCACAC
  ATCCTGTTTC CACACGAGTC CCAGCTGTCT GAGTCACTGG TGACTGTCGG GGGTGTGTTG
  CTCACTCTCA GCTGCTCAAG AGGTGCAATT TCATATAAAG GGAGAGAGAC CTGAACCCTC
  CCCCAGCTTC TCTTCATTCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363816498	MGP_WTSI_4_155602926	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs232461473					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363816498	MGP_WTSI_4_155602926	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156313274 () rs orientation: forward

Symbol	Name	Function Class
Klhl17	kelch-like 17	518 bp downstream
Mir7658	microRNA 7658	1242 bp downstream
Plekhn1	pleckstrin homology domain containing, family N member 1	275 bp upstream
Rr606703	regulatory region 606703	within coordinates
Rr606704	regulatory region 606704	244 bp distal
Tssr45022	transcription start site region 45022	279 bp upstream
Tssr45023	transcription start site region 45023	247 bp upstream
Tssr45024	transcription start site region 45024	8 bp upstream