rs232462543 SNP Detail

Summary

• ID
  rs232462543
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:9528384 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGAAAATTG ACTAGTAGAT
  TGCTGCCAGC ACAAAGTGGG AGGTATCGTG ACATGCCTAT GTGACGCATA TGGGTGGTTA
  TGATCATCAA TCTAAAAACA TTTCAAAATT TAAAAAGGTG AAGTGAAAAT CCTGTTTAAC
  AGCAAGAATT TTTACTTTTT TTTTTTTTTT GTAAGAAATA GCATGGCCAA GAGGGAAGCA
  Y
  AGGGGCAAAG GATTGTACCA AACAGCAGCA TGGTTCTCGT GCTTCCTGCC AGCTATTTGC
  ACACATTTAA CATGAGATAA TGACTCTCCC TCACCAAGTG ACTCATGCTC CGTCATGCTG
  AAGAGTGTGA CTCCTCTGAT GATTCTCTTC ATAAGAACAT GCAAGGGTTT TCCATCCTTG
  CTGATTACAA AGTAAAGTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss392985991	MGP_WTSI_15_9458053	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs232462543					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss392985991	MGP_WTSI_15_9458053	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:9528384 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Il7r	interleukin 7 receptor			Intron
				Noncoding-Transcript-Variant
Rr186	regulatory region 186			1442 bp proximal
Rr499183	regulatory region 499183			within coordinates
Rr499184	regulatory region 499184			1520 bp proximal
Tssr130645	transcription start site region 130645			1222 bp downstream
Tssr130646	transcription start site region 130646			174 bp upstream
Tssr130647	transcription start site region 130647			192 bp upstream
Tssr130648	transcription start site region 130648			229 bp upstream
Tssr133701	transcription start site region 133701			246 bp upstream
Tssr133702	transcription start site region 133702			210 bp upstream
Tssr133703	transcription start site region 133703			1399 bp downstream
Tssr133704	transcription start site region 133704			1440 bp downstream
Tssr133705	transcription start site region 133705			1515 bp downstream
Tssr133706	transcription start site region 133706			1552 bp downstream
Tssr133707	transcription start site region 133707			1570 bp downstream
Tssr133708	transcription start site region 133708			1734 bp downstream
Tssr133709	transcription start site region 133709			1836 bp downstream