rs232462639 SNP Detail

Summary

• ID
  rs232462639
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:4168776 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTGAGAGGT CAGCTTGAAA GCCACTAGGa
  gaaatctaag tcagaatgac acatacctgc gggcccatgt gtttgcagtt tttacagagg
  agccaggtta ctggattagt ctagacaccc atcaacggat agatgattgg ataaagaaat
  Y
  gtggtgtatg ttcccaaagg ggttttggac agccttgaag aaaagcataa ttatgtcatt
  tttgagaaaa tggatagaac tggaggttaa attaaataac ccatactgat aaagacagct
  actatgtctc atctcatttg tgACACCCCC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322093645	CHEV_7_4117379	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs232462639					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:4168776 () rs orientation: forward

Symbol	Name	Function Class
Cdc42ep5	CDC42 effector protein 5	946 bp upstream
Gm73056	predicted gene, 73056	within coordinates
Rr641923	regulatory region 641923	1915 bp distal
Rr641924	regulatory region 641924	928 bp distal
Rr641925	regulatory region 641925	427 bp distal
Rr641926	regulatory region 641926	574 bp proximal
Rr641927	regulatory region 641927	997 bp proximal
Tssr70452	transcription start site region 70452	1511 bp upstream
Tssr70453	transcription start site region 70453	1201 bp upstream
Tssr70454	transcription start site region 70454	1102 bp upstream
Tssr70455	transcription start site region 70455	1062 bp upstream
Tssr70456	transcription start site region 70456	1036 bp upstream
Tssr70457	transcription start site region 70457	950 bp upstream
Tssr70458	transcription start site region 70458	716 bp upstream